{"id":"https://openalex.org/W7077490081","doi":"https://doi.org/10.5281/zenodo.16915317","title":"Supporting data and code for \"Lightweight multi-scale early warning system for influenza A spillovers\"","display_name":"Supporting data and code for \"Lightweight multi-scale early warning system for influenza A spillovers\"","publication_year":2025,"publication_date":"2025-08-20","ids":{"openalex":"https://openalex.org/W7077490081","doi":"https://doi.org/10.5281/zenodo.16915317"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:16915317","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16915317","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/other"},"type":"other","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.16915317","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Alfonsi, Tommaso","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alfonsi, Tommaso","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bernasconi, Anna","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bernasconi, Anna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Chiara, Matteo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chiara, Matteo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Ceri, Stefano","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ceri, Stefano","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.692300021648407,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.692300021648407,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13067","display_name":"Geological Modeling and Analysis","score":0.027300000190734863,"subfield":{"id":"https://openalex.org/subfields/1906","display_name":"Geochemistry and Petrology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14311","display_name":"Electrical and Electromagnetic Research","score":0.017100000753998756,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.6283000111579895},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.611299991607666},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.532800018787384},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.3779999911785126},{"id":"https://openalex.org/keywords/warning-system","display_name":"Warning system","score":0.35670000314712524}],"concepts":[{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.6283000111579895},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.611299991607666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5684999823570251},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.532800018787384},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3779999911785126},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3767000138759613},{"id":"https://openalex.org/C29825287","wikidata":"https://www.wikidata.org/wiki/Q1427940","display_name":"Warning system","level":2,"score":0.35670000314712524},{"id":"https://openalex.org/C2779296788","wikidata":"https://www.wikidata.org/wiki/Q5326904","display_name":"Early warning system","level":3,"score":0.3522000014781952},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3041999936103821},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.2802000045776367},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2660999894142151},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.26510000228881836},{"id":"https://openalex.org/C15190224","wikidata":"https://www.wikidata.org/wiki/Q1417099","display_name":"Accession number (library science)","level":4,"score":0.262800008058548},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2621999979019165}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:zenodo.org:16915317","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16915317","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/other"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:16915317","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16915317","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"&lt;p&gt;This":[0],"repository":[1,139],"includes":[2],"the":[3,9,13,51,56,60,66,74,95,107,119,150],"code":[4,144],"and":[5,31,46,73,81,89,101,113,125],"accession":[6],"IDs":[7],"of":[8,62,68,94,106,118],"viral":[10],"sequences":[11,63,77,85,93,105,117],"for":[12,20,44,65],"manuscript":[14],"\"Lightweight":[15],"multi-scale":[16],"early":[17],"warning":[18],"system":[19],"influenza":[21],"A":[22],"spillovers\"":[23],"by":[24],"Alfonsi":[25],"T.,":[26],"Bernasconi":[27],"A.,":[28],"Chiara":[29],"M.,":[30],"Ceri":[32],"S.&lt;/p&gt;":[33],"&lt;h1&gt;Index&lt;/h1&gt;":[34],"&lt;p&gt;The":[35],"software":[36],"is":[37,130,147],"released":[38],"as":[39],"a":[40],"docker":[41],"container.":[42],"Instructions":[43],"installation":[45],"use":[47],"are":[48],"provided":[49],"in":[50],"README.md":[52],"file.":[53],"&nbsp;&lt;/p&gt;":[54],"&lt;p&gt;Furthermore,":[55],"folder":[57],"dataset_ids":[58],"contains":[59],"list":[61],"used":[64],"analysis":[67],"H1N1":[69],"sequences,":[70,72],"H5N1":[71],"sensitivity/specificity":[75],"analysis.&lt;br&gt;H1N1":[76],"collected":[78,86,98,110,122],"between":[79,87,99,111,123],"2008/08/07":[80],"2010/01/09":[82],"&gt;":[83,91],"H1N1_08-09_dataset.csv&lt;br&gt;H5N1":[84],"2019/01/12":[88],"2025/05/29":[90],"H5N1_19-25_dataset.csv&lt;br&gt;H1N1":[92],"group":[96,108,120],"G1":[97],"2009/01/26":[100],"2009/02/20":[102,124],"(25":[103],"days)&lt;br&gt;H1N1":[104,116],"G2":[109],"2009/12/14":[112],"2010/01/10":[114],"(27":[115],"\"noise\"":[121],"2009/03/01":[126],"(9":[127],"days)&lt;/p&gt;":[128],"&lt;p&gt;It":[129],"also":[131],"possible":[132],"to":[133],"&lt;a":[134],"href=\"https://github.com/DEIB-GECO/flu-warning-system\"":[135],"target=\"_blank\"":[136],"rel=\"noopener\"&gt;browse":[137],"this":[138],"on":[140],"GitHub&lt;/a&gt;.&lt;/p&gt;":[141],"&lt;h1&gt;License&lt;/h1&gt;":[142],"&lt;div&gt;The":[143],"hereby":[145],"contained":[146],"lincensed":[148],"under":[149],"MIT":[151],"License":[152],"(see":[153],"LICENSE":[154],"file).&lt;/div&gt;":[155]},"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
