{"id":"https://openalex.org/W7108222051","doi":"https://doi.org/10.5281/zenodo.16845409","title":"GutBrainIE 2025 \u2013 Gut Brain Interplay Information Extraction @ CLEF 2025","display_name":"GutBrainIE 2025 \u2013 Gut Brain Interplay Information Extraction @ CLEF 2025","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W7108222051","doi":"https://doi.org/10.5281/zenodo.16845409"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.16845409","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16845409","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.16845409","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Martinelli, Marco","orcid":"https://orcid.org/0009-0001-1596-8642"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Martinelli, Marco","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0009-0001-1596-8642","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Silvello, Gianmaria","orcid":"https://orcid.org/0000-0003-4970-4554"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvello, Gianmaria","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-4970-4554","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bonato, Vanessa","orcid":"https://orcid.org/0009-0002-9918-282X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bonato, Vanessa","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0009-0002-9918-282X","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Di Nunzio, Giorgio Maria","orcid":"https://orcid.org/0000-0001-9709-6392"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Di Nunzio, Giorgio Maria","raw_affiliation_strings":["Universit\u00e0 degli Studi di Padova Dipartimento di Ingegneria Dell'Informazione"],"raw_orcid":"https://orcid.org/0000-0001-9709-6392","affiliations":[{"raw_affiliation_string":"Universit\u00e0 degli Studi di Padova Dipartimento di Ingegneria Dell'Informazione","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ferro, Nicola","orcid":"https://orcid.org/0000-0001-9219-6239"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ferro, Nicola","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0001-9219-6239","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Irrera, Ornella","orcid":"https://orcid.org/0000-0003-2284-5699"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Irrera, Ornella","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-2284-5699","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"MARCHESIN, STEFANO","orcid":"https://orcid.org/0000-0003-0362-5893"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"MARCHESIN, STEFANO","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-0362-5893","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Menotti, Laura","orcid":"https://orcid.org/0000-0002-0676-682X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Menotti, Laura","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0002-0676-682X","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":null,"display_name":"Vezzani, Federica","orcid":"https://orcid.org/0000-0003-2240-6127"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vezzani, Federica","raw_affiliation_strings":["University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-2240-6127","affiliations":[{"raw_affiliation_string":"University of Padua","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.784600019454956},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5916000008583069},{"id":"https://openalex.org/keywords/clef","display_name":"Clef","score":0.4876999855041504},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.483599990606308},{"id":"https://openalex.org/keywords/binary-relation","display_name":"Binary relation","score":0.4487999975681305},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4235000014305115},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41530001163482666},{"id":"https://openalex.org/keywords/predicate","display_name":"Predicate (mathematical logic)","score":0.40689998865127563}],"concepts":[{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.784600019454956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7516999840736389},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5916000008583069},{"id":"https://openalex.org/C107763842","wikidata":"https://www.wikidata.org/wiki/Q181040","display_name":"Clef","level":3,"score":0.4876999855041504},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.483599990606308},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48249998688697815},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.46230000257492065},{"id":"https://openalex.org/C65180967","wikidata":"https://www.wikidata.org/wiki/Q130901","display_name":"Binary relation","level":2,"score":0.4487999975681305},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44119998812675476},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4235000014305115},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41530001163482666},{"id":"https://openalex.org/C140146324","wikidata":"https://www.wikidata.org/wiki/Q1144319","display_name":"Predicate (mathematical logic)","level":2,"score":0.40689998865127563},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.3917999863624573},{"id":"https://openalex.org/C33326189","wikidata":"https://www.wikidata.org/wiki/Q17092450","display_name":"Information integration","level":2,"score":0.3328999876976013},{"id":"https://openalex.org/C2775945657","wikidata":"https://www.wikidata.org/wiki/Q381442","display_name":"Structuring","level":2,"score":0.3296000063419342},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.32910001277923584},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.3215999901294708},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.3149999976158142},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.2962999939918518},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.289000004529953},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.2827000021934509},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.2745000123977661},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.262800008058548},{"id":"https://openalex.org/C87868495","wikidata":"https://www.wikidata.org/wiki/Q750843","display_name":"Information processing","level":2,"score":0.2500999867916107}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.16845409","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16845409","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.16845409","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.16845409","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6207606345","display_name":"HetERogeneous sEmantic Data integratIon for the guT-bRain interplaY","funder_award_id":"101137074","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"GutBrainIE":[0,87,123],"2025":[1,10],"\u2013":[2],"Gut":[3],"Brain":[4],"Interplay":[5],"Information":[6,118],"Extraction":[7,119,159,216,239],"@":[8],"CLEF":[9],"Dataset":[11],"Description":[12],"Recent":[13],"studies":[14],"link":[15],"the":[16,33,81,84,89,108,148,206,227,243,250,260],"gut":[17],"microbiota":[18],"to":[19,24,53,79,107,112,136,194,225,248],"mental":[20],"health":[21],"conditions":[22],"and":[23,30,49,70,138,179,191,258],"neurodegenerative":[25],"diseases":[26],"such":[27],"as":[28],"Parkinson's":[29],"Alzheimer's.":[31],"However,":[32],"rapid":[34],"speed":[35],"at":[36],"which":[37,196],"this":[38,64,218,241],"research":[39],"field":[40],"is":[41,242],"evolving":[42],"presents":[43],"a":[44,165,174,202,256],"significant":[45],"challenge":[46],"for":[47,68],"clinicians":[48],"researchers":[50],"who":[51],"have":[52,135,192],"keep":[54],"pace":[55],"with":[56,164],"an":[57],"ever-expanding":[58],"volume":[59],"of":[60,83,91,98,127,147,167,176],"biomedical":[61,104,114],"literature.":[62],"In":[63],"context,":[65],"automatic":[66],"tools":[67],"extracting":[69,99],"structuring":[71],"information":[72],"from":[73,103],"scientific":[74],"texts":[75,105],"are":[76,162,198],"becoming":[77],"essential":[78],"support":[80],"understanding":[82],"gut-brain":[85,109],"axis.":[86],"promotes":[88],"development":[90],"Natural":[92],"Language":[93],"Processing":[94],"(NLP)":[95],"systems":[96,134,161],"capable":[97],"structured":[100],"specialized":[101],"knowledge":[102],"related":[106],"axis,":[110],"aiming":[111],"accelerate":[113],"discoveries":[115],"through":[116],"automated":[117],"(IE).":[120],"Supported":[121],"Tasks":[122],"proposes":[124],"four":[125],"tasks":[126],"increasing":[128],"complexity:":[129],"Named":[130],"Entity":[131],"Recognition":[132],"(NER):":[133],"identify":[137,195,249],"classify":[139],"specific":[140,228],"text":[141],"spans":[142],"(entity":[143],"mentions)":[144],"into":[145],"one":[146],"13":[149],"predefined":[150,168],"categories":[151],"(e.g.,":[152,182],"bacteria,":[153],"chemical,":[154],"microbiota).":[155],"Binary":[156],"Tag-based":[157,214],"Relation":[158,215,238],"(BT-RE):":[160],"provided":[163],"set":[166],"relation":[169,200,229,257,262],"types,":[170],"each":[171,232],"defined":[172],"by":[173,222],"combination":[175],"compatible":[177],"head":[178],"tail":[180],"entities":[181,197],"Chemical":[183],"->":[184],"Microbiome":[185],"via":[186],"Impact":[187],"or":[188,209],"Produced":[189],"by),":[190],"asked":[193],"in":[199,255],"within":[201],"document,":[203],"without":[204],"specifying":[205],"exact":[207,251],"predicate":[208,230],"entity":[210,234,252],"mentions":[211],"involved.":[212],"Ternary":[213,236],"(TT-RE):":[217],"task":[219],"extends":[220],"BT-RE":[221],"requiring":[223],"participants":[224],"predict":[226],"connecting":[231],"head-tail":[233],"pair.":[235],"Mention-based":[237],"(TM-RE):":[240],"most":[244],"challenging":[245],"task,":[246],"demanding":[247],"mention":[253],"involved":[254],"assign":[259],"correct":[261],"predicate.":[263]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-12-03T00:00:00"}
