{"id":"https://openalex.org/W6968331738","doi":"https://doi.org/10.5281/zenodo.15391268","title":"SyntheMol-RL Data","display_name":"SyntheMol-RL Data","publication_year":2025,"publication_date":"2025-05-12","ids":{"openalex":"https://openalex.org/W6968331738","doi":"https://doi.org/10.5281/zenodo.15391268"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.15391268","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15391268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.15391268","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Swanson, Kyle","orcid":"https://orcid.org/0000-0002-7385-7844"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Swanson, Kyle","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liu, Gary","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Liu, Gary","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Catacutan, Denise","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Catacutan, Denise","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"McLellan, Stewart","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"McLellan, Stewart","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Arnold, Autumn","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Arnold, Autumn","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tu, Megan","orcid":"https://orcid.org/0000-0001-7405-0500"},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Tu, Megan","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Brown, Eric","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Brown, Eric","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zou, James","orcid":"https://orcid.org/0000-0001-8880-4764"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zou, James","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":null,"display_name":"Stokes, Jonathan","orcid":"https://orcid.org/0009-0001-8378-2380"},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Stokes, Jonathan","raw_affiliation_strings":["McMaster University"],"affiliations":[{"raw_affiliation_string":"McMaster University","institution_ids":["https://openalex.org/I98251732"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5846999883651733},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.5295000076293945},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.5045999884605408},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46299999952316284},{"id":"https://openalex.org/keywords/column","display_name":"Column (typography)","score":0.4120999872684479},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.38499999046325684}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5882999897003174},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5846999883651733},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.5295000076293945},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.5045999884605408},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46299999952316284},{"id":"https://openalex.org/C2780551164","wikidata":"https://www.wikidata.org/wiki/Q2306599","display_name":"Column (typography)","level":3,"score":0.4120999872684479},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4007999897003174},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.38499999046325684},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3538999855518341},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.32670000195503235},{"id":"https://openalex.org/C2777338717","wikidata":"https://www.wikidata.org/wiki/Q1762621","display_name":"Vendor","level":2,"score":0.31690001487731934},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.31119999289512634},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.29319998621940613},{"id":"https://openalex.org/C61224824","wikidata":"https://www.wikidata.org/wiki/Q2260434","display_name":"Mixture model","level":2,"score":0.27379998564720154},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.2558000087738037}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.15391268","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15391268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.15391268","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15391268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"This":[0],"archive":[1],"contains":[2],"data":[3,19,68,73],"accompanying":[4,64],"the":[5,65,71,75,80,135,139,142,146,154,181],"paper":[6,66],"\"SyntheMol-RL:":[7],"a":[8],"reinforcement":[9],"learning":[10],"framework":[11],"for":[12,74],"designing":[13],"novel":[14],"and":[15,27,44,79,86,103],"synthesizable":[16],"antibiotics\".":[17],"The":[18,61,110,130,158],"is":[20],"structured":[21],"as":[22,70],"follows.":[23],"property_prediction_models:":[24],"Chemprop,":[25],"Chemprop-RDKit,":[26],"MLP-RDKit":[28],"models":[29,57,78],"trained":[30],"to":[31,119,133,138],"predict":[32],"S.":[33],"aureus":[34],"growth":[35],"inhibition":[36],"or":[37,50,95,113,128],"aqueous":[38],"solubility.":[39],"For":[40],"each":[41],"model,":[42],"dataset,":[43],"dataset":[45],"split":[46,123],"(cross-validation":[47],"by":[48,91,124],"default":[49],"scaffold":[51],"split),":[52],"an":[53],"ensemble":[54],"of":[55,115,145,161],"ten":[56],"was":[58],"trained.":[59],"supplementary_tables:":[60],"supplementary":[62],"tables":[63],"with":[67,175],"such":[69],"training":[72],"property":[76,177],"prediction":[77],"compounds":[81,118],"that":[82],"were":[83],"generated,":[84],"synthesized,":[85],"tested.":[87],"synthemol_generations:":[88],"Molecules":[89],"generated":[90],"SyntheMol":[92],"(RL-Chemprop,":[93],"RL-MLP,":[94],"MCTS":[96],"versions)":[97],"across":[98],"different":[99],"settings":[100],"(ablation":[101],"experiments)":[102],"random":[104],"seeds":[105],"(five":[106],"per":[107],"setting).":[108],"synthesized_spectra:":[109],"spectra":[111,136],"(LC-MS":[112],"1H-NMR)":[114],"all":[116],"synthesized":[117],"verify":[120],"their":[121],"purity,":[122],"synthesis":[125],"vendor":[126],"(Enamine":[127],"WuXi).":[129],"IDs":[131,140],"used":[132,179],"label":[134],"correspond":[137],"in":[141,151,153,180],"\"id\"":[143],"column":[144],"sheet":[147],"named":[148],"\"Ordered":[149],"Molecules\"":[150],"Table_S11.xlsx":[152],"supplementary_tables":[155],"folder.":[156],"vs_chemprop:":[157],"full":[159],"set":[160],"21":[162],"million":[163,166,171],"molecules":[164],"(14":[165],"from":[167,172],"Enamine":[168],"REAL,":[169],"7":[170],"WuXi":[173],"GalaXi)":[174],"Chemprop-RDKit":[176],"predictions":[178],"virtual":[182],"screening":[183],"(VS-Chemprop)":[184],"baseline.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
