{"id":"https://openalex.org/W6930842664","doi":"https://doi.org/10.5281/zenodo.15299993","title":"Comprehensive mapping of genome structure with ultra-high-resolution 3D genomics and deep learning","display_name":"Comprehensive mapping of genome structure with ultra-high-resolution 3D genomics and deep learning","publication_year":2025,"publication_date":"2025-04-29","ids":{"openalex":"https://openalex.org/W6930842664","doi":"https://doi.org/10.5281/zenodo.15299993"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.15299993","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15299993","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.15299993","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Feng, Fan","orcid":"https://orcid.org/0000-0002-5990-312X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng, Fan","raw_affiliation_strings":["University of Michigan\u2013Ann Arbor"],"raw_orcid":"https://orcid.org/0000-0002-5990-312X","affiliations":[{"raw_affiliation_string":"University of Michigan\u2013Ann Arbor","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":null,"display_name":"Hong, Clarice Kit Yee","orcid":"https://orcid.org/0000-0002-9485-1425"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong, Clarice Kit Yee","raw_affiliation_strings":["Massachusetts Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-9485-1425","affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T12527","display_name":"Chemistry and Stereochemistry Studies","score":0.05849999934434891,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12527","display_name":"Chemistry and Stereochemistry Studies","score":0.05849999934434891,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12114","display_name":"Sensory Analysis and Statistical Methods","score":0.029200000688433647,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13141","display_name":"Statistical Methods and Applications","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7195000052452087},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45989999175071716},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.391400009393692},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.30889999866485596},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.28119999170303345}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7195000052452087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6338000297546387},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5633999705314636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4602000117301941},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45989999175071716},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.391400009393692},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3398999869823456},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.30889999866485596},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.28119999170303345},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.266400009393692}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.15299993","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15299993","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.15299993","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15299993","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"3D":[0,14],"contact":[1],"map":[2],"predictions":[3,18],"by":[4],"Cleopatra,":[5],"a":[6],"new":[7],"deep":[8],"learning":[9],"model":[10],"that":[11],"predicts":[12],"high-resolution":[13],"genome":[15],"structure.":[16],"All":[17],"are":[19],"in":[20],".cool":[21],"format":[22],"at":[23,25,33],"binned":[24],"500bp":[26],"(for":[27,35],"interactions":[28,36],"up":[29,37],"to":[30,38],"500kb)":[31],"and":[32],"2kb":[34],"2Mb)":[39],"respectively.":[40],"Multi":[41],"resolution":[42],"files":[43],"can":[44],"be":[45],"generated":[46],"using":[47],"cooler":[48],"zoomify.":[49]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
