{"id":"https://openalex.org/W6930720562","doi":"https://doi.org/10.5281/zenodo.15284345","title":"QDockBank/QDockBank_: QDockBank V 1.0","display_name":"QDockBank/QDockBank_: QDockBank V 1.0","publication_year":2025,"publication_date":"2025-04-25","ids":{"openalex":"https://openalex.org/W6930720562","doi":"https://doi.org/10.5281/zenodo.15284345"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.15284345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15284345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"type":"software","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.15284345","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Zhang, Yuqi","orcid":"https://orcid.org/0009-0005-9026-6906"},"institutions":[{"id":"https://openalex.org/I149910238","display_name":"Kent State University","ror":"https://ror.org/049pfb863","country_code":"US","type":"education","lineage":["https://openalex.org/I149910238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhang, Yuqi","raw_affiliation_strings":["Kent State University"],"raw_orcid":"https://orcid.org/0009-0005-9026-6906","affiliations":[{"raw_affiliation_string":"Kent State University","institution_ids":["https://openalex.org/I149910238"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuxin, Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I1316902750","display_name":"Cleveland Clinic","ror":"https://ror.org/03xjacd83","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316902750"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuxin, Yang","raw_affiliation_strings":["Cleveland Clinic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cleveland Clinic","institution_ids":["https://openalex.org/I1316902750"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Cheng-Chang, Lu","orcid":"https://orcid.org/0000-0002-2636-0544"},"institutions":[{"id":"https://openalex.org/I1311269955","display_name":"Apple (Israel)","ror":"https://ror.org/04ehjr030","country_code":"IL","type":"company","lineage":["https://openalex.org/I1311269955","https://openalex.org/I4210153776"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Cheng-Chang, Lu","raw_affiliation_strings":["Qradle"],"raw_orcid":"https://orcid.org/0000-0002-2636-0544","affiliations":[{"raw_affiliation_string":"Qradle","institution_ids":["https://openalex.org/I1311269955"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Weiwen, Jiang","orcid":"https://orcid.org/0000-0002-9004-487X"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weiwen, Jiang","raw_affiliation_strings":["George Mason University"],"raw_orcid":"https://orcid.org/0000-0002-9004-487X","affiliations":[{"raw_affiliation_string":"George Mason University","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Feixiong, Cheng","orcid":"https://orcid.org/0000-0002-1736-2847"},"institutions":[{"id":"https://openalex.org/I1316902750","display_name":"Cleveland Clinic","ror":"https://ror.org/03xjacd83","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316902750"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feixiong, Cheng","raw_affiliation_strings":["Cleveland Clinic"],"raw_orcid":"https://orcid.org/0000-0002-1736-2847","affiliations":[{"raw_affiliation_string":"Cleveland Clinic","institution_ids":["https://openalex.org/I1316902750"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bo, Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bo, Fang","raw_affiliation_strings":["Pacific Northwest National Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":null,"display_name":"Qiang, Guan","orcid":"https://orcid.org/0000-0002-3804-8945"},"institutions":[{"id":"https://openalex.org/I149910238","display_name":"Kent State University","ror":"https://ror.org/049pfb863","country_code":"US","type":"education","lineage":["https://openalex.org/I149910238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiang, Guan","raw_affiliation_strings":["Kent State University"],"raw_orcid":"https://orcid.org/0000-0002-3804-8945","affiliations":[{"raw_affiliation_string":"Kent State University","institution_ids":["https://openalex.org/I149910238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T14120","display_name":"Thallium and Germanium Studies","score":0.7125999927520752,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14120","display_name":"Thallium and Germanium Studies","score":0.7125999927520752,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11936","display_name":"Chemical and Physical Properties in Aqueous Solutions","score":0.019099999219179153,"subfield":{"id":"https://openalex.org/subfields/1506","display_name":"Filtration and Separation"},"field":{"id":"https://openalex.org/fields/15","display_name":"Chemical Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11107","display_name":"Selenium in Biological Systems","score":0.00860000029206276,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5722000002861023},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.5688999891281128},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.4410000145435333},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.4077000021934509},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.3580999970436096},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.3041999936103821}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5722000002861023},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.5688999891281128},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4763999879360199},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.4410000145435333},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.4077000021934509},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3756999969482422},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.3580999970436096},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3142000138759613},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3138999938964844},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3118000030517578},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3102000057697296},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.3041999936103821},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.28459998965263367},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.2808000147342682},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.26919999718666077},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2605000138282776},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.25429999828338623}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.15284345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15284345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.5281/zenodo.15284345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15284345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"**QDockBank":[0],"v1.0**":[1],"The":[2],"first":[3],"utility-level":[4],"quantum-generated":[5],"protein":[6,41,53],"active-site":[7,58],"fragment":[8,42,54],"dataset,":[9],"comprising":[10],"55":[11],"fragments":[12],"designed":[13],"for":[14,88,123,152],"protein\u2013ligand":[15],"docking":[16],"research.":[17],"---":[18,49,101,137,154],"###":[19,50,102,138,155],"Directory":[20],"Structure":[21],"QDockBank/":[22],"1e2k/":[23],"1e2k.pdb":[24],"1e2k_metadata.json":[25],"1e2k_RMSD_docking_result.json":[26],"1e2l/":[27],"1e2l.pdb":[28],"1e2l_metadata.json":[29],"1e2l_RMSD_docking_result.json":[30],"1gx8/":[31],"1hdq/":[32],"...":[33],"index.csv":[34],"Each":[35,52],"folder":[36],"(`{pdb_id}`)":[37],"corresponds":[38],"to":[39],"a":[40,56],"and":[43,77,82,93,98],"contains:":[44],"-":[45,158],"`{pdb_id}.pdb`-":[46],"`{pdb_id}_metadata.json`-":[47],"`{pdb_id}_RMSD_docking_result.json`":[48],"Description":[51],"represents":[55],"predicted":[57],"conformation":[59],"generated":[60],"on":[61,126,130],"IBM\u2019s":[62],"127-qubit":[63],"*Eagle":[64],"r3*":[65],"quantum":[66,79],"processor.":[67],"Associated":[68],"metadata":[69],"include":[70],"sequence":[71],"information,":[72],"qubit":[73],"configuration,":[74],"circuit":[75],"depth,":[76],"computed":[78],"energies.":[80],"Docking":[81,125],"RMSD":[83],"evaluation":[84],"results":[85],"are":[86],"provided":[87],"all":[89],"fragments,":[90],"enabling":[91],"benchmarking":[92],"comparative":[94],"analysis":[95],"against":[96],"classical":[97],"AI-based":[99],"methods.":[100],"Reference":[103],"Zhang,":[104],"Y.,":[105,107],"Yang,":[106],"Lu,":[108],"C.-C.,":[109],"Jiang,":[110],"W.,":[111],"Cheng,":[112],"F.,":[113],"Fang,":[114],"B.,":[115],"&":[116],"Guan,":[117],"Q.":[118],"(2025).":[119],"**QDockBank:":[120],"A":[121],"Dataset":[122],"Ligand":[124],"Protein":[127],"Fragments":[128],"Predicted":[129],"Utility-Level":[131],"Quantum":[132],"Computers.**":[133],"*arXiv":[134],"preprint*":[135],"[arXiv:2508.00837](https://arxiv.org/abs/2508.00837)":[136],"License":[139],"This":[140],"dataset":[141],"is":[142],"released":[143],"under":[144],"the":[145,149],"MIT":[146],"License.":[147],"See":[148],"[LICENSE](https://github.com/qiqi-xingyi/QDockBank_/blob/main/LICENSE)":[150],"file":[151],"details.":[153],"Related":[156],"Resources":[157],"GitHub":[159],"Repository:":[160],"[https://github.com/qiqi-xingyi/QDockBank_](https://github.com/qiqi-xingyi/QDockBank_)-":[161],"Release:":[162],"[v1.0](https://github.com/qiqi-xingyi/QDockBank_/releases/tag/v1.0)":[163]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
