{"id":"https://openalex.org/W6893189168","doi":"https://doi.org/10.5281/zenodo.15208345","title":"ONTraC (Ordered Niche Trajectory Construction)","display_name":"ONTraC (Ordered Niche Trajectory Construction)","publication_year":2025,"publication_date":"2025-04-13","ids":{"openalex":"https://openalex.org/W6893189168","doi":"https://doi.org/10.5281/zenodo.15208345"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.15208345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15208345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.15208345","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Wang, Wen","orcid":"https://orcid.org/0000-0003-4366-933X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Wen","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4366-933X","affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Zheng, Shiwei","orcid":"https://orcid.org/0000-0001-6682-6743"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zheng, Shiwei","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6682-6743","affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Shin, Sujung","orcid":"https://orcid.org/0009-0006-7382-6622"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shin, Sujung","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0006-7382-6622","affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ch\u00e1vez-Fuentes, Joselyn Cristina","orcid":"https://orcid.org/0000-0002-4974-4591"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ch\u00e1vez-Fuentes, Joselyn Cristina","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-4974-4591","affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Yuan, Guo-Cheng","orcid":"https://orcid.org/0000-0002-2283-4714"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuan, Guo-Cheng","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2283-4714","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/niche","display_name":"Niche","score":0.7181000113487244},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.6801000237464905},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6097000241279602},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48980000615119934},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42100000381469727},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.365200012922287},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.35659998655319214}],"concepts":[{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.7181000113487244},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6973000168800354},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.6801000237464905},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6097000241279602},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48980000615119934},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42100000381469727},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.415800005197525},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.365200012922287},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.35659998655319214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3529999852180481},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3465999960899353},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3206999897956848},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C103215972","wikidata":"https://www.wikidata.org/wiki/Q5381340","display_name":"Environmental niche modelling","level":4,"score":0.3010999858379364},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.29280000925064087},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.27090001106262207},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.2644999921321869},{"id":"https://openalex.org/C41856607","wikidata":"https://www.wikidata.org/wiki/Q483130","display_name":"Geographic information system","level":2,"score":0.2578999996185303},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.25760000944137573}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.15208345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15208345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.5281/zenodo.15208345","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.15208345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"ONTraC":[0,16,63,129,137,143],"(Ordered":[1],"Niche":[2],"Trajectory":[3],"Construction)":[4],"is":[5,82],"a":[6,25,47,91,111],"niche-centered,":[7],"machine":[8],"learning":[9],"method":[10],"for":[11,36,136,142],"constructing":[12],"spatially":[13,49],"continuous":[14,125],"trajectories.":[15],"differs":[17],"from":[18,118],"existing":[19],"tools":[20],"in":[21,122],"that":[22],"it":[23],"treats":[24],"niche,":[26],"rather":[27],"than":[28],"an":[29],"individual":[30],"cell,":[31],"as":[32,46,90],"the":[33,73,84,96,120],"basic":[34],"unit":[35],"spatial":[37,69],"trajectory":[38,108],"analysis.":[39],"In":[40],"this":[41],"context,":[42],"we":[43],"define":[44],"niche":[45,85,107],"multicellular,":[48],"localized":[50],"region":[51],"where":[52],"different":[53],"cell":[54],"types":[55],"may":[56],"coexist":[57],"and":[58,68,103],"interact":[59],"with":[60,124],"each":[61],"other.":[62],"seamlessly":[64],"integrates":[65],"cell-type":[66],"composition":[67],"information":[70],"by":[71],"using":[72],"graph":[74],"neural":[75],"network":[76],"modeling":[77],"framework.":[78],"Its":[79],"output,":[80],"which":[81],"called":[83],"trajectory,":[86],"can":[87],"be":[88],"viewed":[89],"one":[92],"dimensional":[93],"representation":[94],"of":[95],"tissue":[97,126],"microenvironment":[98,127],"continuum.":[99],"By":[100],"disentangling":[101],"cell-level":[102],"niche-":[104],"level":[105],"properties,":[106],"analysis":[109],"provides":[110],"coherent":[112],"framework":[113],"to":[114],"study":[115],"coordinated":[116],"responses":[117],"all":[119],"cells":[121],"association":[123],"variations.":[128],"website":[130],"Software":[131],"GitHub":[132],"repository":[133,141],"Reproducible":[134],"code":[135],"paper":[138,144],"Zenodo":[139],"dataset":[140]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
