{"id":"https://openalex.org/W6949295164","doi":"https://doi.org/10.5281/zenodo.13985446","title":"The Metagenome-Assembled Genome Inventory for Children (MAGIC)","display_name":"The Metagenome-Assembled Genome Inventory for Children (MAGIC)","publication_year":2024,"publication_date":"2024-10-01","ids":{"openalex":"https://openalex.org/W6949295164","doi":"https://doi.org/10.5281/zenodo.13985446"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.13985446","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13985446","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.13985446","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Peng, Ye","orcid":"https://orcid.org/0000-0003-3791-2305"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210103011","display_name":"Microbiotix (United States)","ror":"https://ror.org/022xmez67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103011"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Peng, Ye","raw_affiliation_strings":["Microbiota I-Center","Chinese University of Hong Kong"],"affiliations":[{"raw_affiliation_string":"Microbiota I-Center","institution_ids":["https://openalex.org/I4210103011"]},{"raw_affiliation_string":"Chinese University of Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhu, Jie","orcid":"https://orcid.org/0000-0002-5789-6296"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210103011","display_name":"Microbiotix (United States)","ror":"https://ror.org/022xmez67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103011"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhu, Jie","raw_affiliation_strings":["Microbiota I-Center","Chinese University of Hong Kong"],"affiliations":[{"raw_affiliation_string":"Microbiota I-Center","institution_ids":["https://openalex.org/I4210103011"]},{"raw_affiliation_string":"Chinese University of Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wang, Shilan","orcid":"https://orcid.org/0000-0002-9334-8924"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210103011","display_name":"Microbiotix (United States)","ror":"https://ror.org/022xmez67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103011"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Wang, Shilan","raw_affiliation_strings":["Microbiota I-Center","Chinese University of Hong Kong"],"affiliations":[{"raw_affiliation_string":"Microbiota I-Center","institution_ids":["https://openalex.org/I4210103011"]},{"raw_affiliation_string":"Chinese University of Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Liu, Yingzhi","orcid":"https://orcid.org/0000-0001-8717-3841"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210103011","display_name":"Microbiotix (United States)","ror":"https://ror.org/022xmez67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103011"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Liu, Yingzhi","raw_affiliation_strings":["Microbiota I-Center","Chinese University of Hong Kong"],"affiliations":[{"raw_affiliation_string":"Microbiota I-Center","institution_ids":["https://openalex.org/I4210103011"]},{"raw_affiliation_string":"Chinese University of Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":null,"display_name":"Liu, Xin","orcid":"https://orcid.org/0009-0008-8541-9615"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210103011","display_name":"Microbiotix (United States)","ror":"https://ror.org/022xmez67","country_code":"US","type":"company","lineage":["https://openalex.org/I4210103011"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Liu, Xin","raw_affiliation_strings":["Microbiota I-Center","Chinese University of Hong Kong"],"affiliations":[{"raw_affiliation_string":"Microbiota I-Center","institution_ids":["https://openalex.org/I4210103011"]},{"raw_affiliation_string":"Chinese University of Hong Kong","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I177725633","https://openalex.org/I4210103011"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.703499972820282},{"id":"https://openalex.org/keywords/keystone-species","display_name":"Keystone species","score":0.6021000146865845},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5133000016212463},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5044000148773193},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4602000117301941},{"id":"https://openalex.org/keywords/bifidobacterium","display_name":"Bifidobacterium","score":0.45980000495910645},{"id":"https://openalex.org/keywords/candidate-gene","display_name":"Candidate gene","score":0.3959999978542328}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.703499972820282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6568999886512756},{"id":"https://openalex.org/C105234605","wikidata":"https://www.wikidata.org/wiki/Q518808","display_name":"Keystone species","level":3,"score":0.6021000146865845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5720000267028809},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5133000016212463},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5044000148773193},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4602000117301941},{"id":"https://openalex.org/C2780305828","wikidata":"https://www.wikidata.org/wiki/Q132656","display_name":"Bifidobacterium","level":4,"score":0.45980000495910645},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42250001430511475},{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.3959999978542328},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3831000030040741},{"id":"https://openalex.org/C2776996202","wikidata":"https://www.wikidata.org/wiki/Q4904768","display_name":"Bifidobacterium longum","level":5,"score":0.35190001130104065},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.3425999879837036},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.33250001072883606},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.32420000433921814},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.31290000677108765},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.30809998512268066}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.13985446","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13985446","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.13985446","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13985446","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Existing":[0],"microbiota":[1],"databases":[2],"are":[3,54],"biased":[4],"towards":[5],"adult":[6],"samples,":[7],"hampering":[8],"accurate":[9],"profiling":[10],"of":[11,30,39,52,115,134,136,140,147],"the":[12,62,108,124],"infant":[13],"gut":[14],"microbiome.":[15],"Here,":[16],"we":[17,112],"generated":[18],"a":[19,27],"Metagenome-Assembled":[20],"Genome":[21],"Inventory":[22],"for":[23],"Children":[24],"(MAGIC)":[25],"from":[26,36],"large":[28],"collection":[29],"bulk":[31],"and":[32,44,50,82,100,118,144],"viral-like":[33],"particle-enriched":[34],"metagenomes":[35],"0-7":[37],"years":[38],"age,":[40],"encompassing":[41],"3,299":[42],"prokaryotic":[43],"139,624":[45],"viral":[46],"species-level":[47],"genomes,":[48],"8.5%":[49],"63.9%":[51],"which":[53],"novel.":[55],"MAGIC":[56,125],"improves":[57],"early-life":[58,137],"microbiome":[59],"profiling,":[60],"with":[61,91,103],"greatest":[63],"improvement":[64],"in":[65,69,89,97],"read":[66],"mapping":[67],"observed":[68],"Africans.":[70],"We":[71],"then":[72],"identified":[73],"54":[74],"candidate":[75,141],"keystone":[76,142],"species,":[77,143],"including":[78],"several":[79],"Bifidobacterium":[80],"spp.":[81],"four":[83],"phages,":[84],"forming":[85],"guilds":[86],"that":[87,131],"fluctuated":[88],"abundance":[90],"time.":[92],"Their":[93],"abundances":[94],"were":[95,101],"reduced":[96],"preterm":[98],"infants":[99],"associated":[102],"childhood":[104],"allergies.":[105],"By":[106],"analyzing":[107],"B.":[109],"longum":[110],"pangenome,":[111],"found":[113],"evidence":[114],"phage-mediated":[116],"evolution":[117],"quorum":[119],"sensing-related":[120],"ecological":[121],"adaptation.":[122],"Together,":[123],"database":[126],"recovers":[127],"previously":[128],"uncharted":[129],"genomes":[130],"enable":[132],"characterization":[133],"dynamics":[135],"microbiomes,":[138],"identification":[139],"strain-level":[145],"study":[146],"target":[148],"species.":[149]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}