{"id":"https://openalex.org/W6911889553","doi":"https://doi.org/10.5281/zenodo.13939470","title":"BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph 2.0","display_name":"BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph 2.0","publication_year":2024,"publication_date":"2024-10-25","ids":{"openalex":"https://openalex.org/W6911889553","doi":"https://doi.org/10.5281/zenodo.13939470"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.13939470","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13939470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.13939470","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Renaux, Alexandre","orcid":"https://orcid.org/0000-0002-4339-2791"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Renaux, Alexandre","raw_affiliation_strings":["Universit\u00e9 Libre de Bruxelles","Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bosch, Inas","orcid":"https://orcid.org/0009-0009-7776-5988"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bosch, Inas","raw_affiliation_strings":["Universit\u00e9 Libre de Bruxelles","Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lenaerts, Tom","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Lenaerts, Tom","raw_affiliation_strings":["Universit\u00e9 Libre de Bruxelles","Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"last","author":{"id":null,"display_name":"Now\u00e9, Ann","orcid":"https://orcid.org/0000-0001-6346-4564"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Now\u00e9, Ann","raw_affiliation_strings":["Vrije Universiteit Brussel"],"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel","institution_ids":["https://openalex.org/I13469542"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I13469542","https://openalex.org/I132053463"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.7257000207901001},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.6373000144958496},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5151000022888184},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4440999925136566},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44200000166893005},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.37380000948905945},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.3549000024795532},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.3490000069141388}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7537000179290771},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.7257000207901001},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.6373000144958496},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5151000022888184},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4440999925136566},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44200000166893005},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.37380000948905945},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.3549000024795532},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.3490000069141388},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34860000014305115},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3456999957561493},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.3156999945640564},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.2978000044822693},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2903999984264374},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.2754000127315521},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.26820001006126404},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.2669999897480011},{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.2621000111103058},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.2556999921798706},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25369998812675476},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.25200000405311584}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.13939470","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13939470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.13939470","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.13939470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"BOCK":[0,92,142],"is":[1,178],"a":[2,56,151,174],"knowledge":[3,30],"graph":[4],"integrating":[5],"oligogenic":[6],"disease":[7],"information":[8,118],"(originally":[9],"from":[10],"the":[11,39,47,68,98,125,129,155,159,198],"Oligogenic":[12],"Disease":[13],"Database":[14],"(Natchtegael":[15],"et":[16,114,122],"al.":[17],"2022))":[18],"together":[19],"with":[20,182],"multiple":[21,162],"biological":[22],"networks":[23,35],"and":[24,50,62,101,116,166,180],"ontologies.":[25],"Compared":[26],"to":[27,37,72,83],"more":[28],"generic":[29],"graphs,":[31],"we":[32],"selected":[33],"specifically":[34],"relevant":[36],"understand":[38],"molecular":[40],"mechanisms":[41],"of":[42,59,97,158],"epistasis,":[43],"placing":[44],"genes":[45,61],"as":[46,103,105],"central":[48],"entities,":[49],"focused":[51],"on":[52],"trusted":[53],"resources":[54],"describing":[55],"large":[57],"set":[58],"human":[60],"their":[63,73],"interactions.":[64],"All":[65],"entities":[66],"in":[67,144],"KG":[69,160],"are":[70],"linked":[71,89],"source":[74],"database":[75,126],"entry":[76],"via":[77],"an":[78],"URI":[79],"(Uniform":[80],"Resource":[81],"Identifier)":[82],"facilitate":[84],"integrations":[85],"within":[86],"larger":[87],"bioinformatics":[88],"data":[90],"repositories.":[91],"2.0":[93,143],"integrates":[94],"recent":[95],"versions":[96],"used":[99,127],"ontologies":[100],"databases,":[102],"well":[104],"additional":[106],"pathway-specific":[107],"(The":[108],"Reactome":[109],"Pathway":[110],"Knowledgebase":[111],"2024,":[112],"Milacic":[113],"al.)":[115],"tissue-specific":[117],"(COXPRESdb":[119],"v8,":[120],"Obayashi":[121],"al.).":[123],"Additionally":[124],"for":[128],"coexpression":[130],"relation":[131],"between":[132],"genes,":[133],"has":[134],"been":[135],"replaced":[136],"by":[137,161],"COXPRESdb":[138],"v8.":[139],"We":[140],"provide":[141],"three":[145],"formats:":[146],"GraphML":[147],"(Graph":[148],"Markup":[149,172],"Language):":[150,173],"network":[152],"format":[153],"enabling":[154],"fast":[156],"import":[157,186],"libraries":[163],"(e.g":[164,168],"networkx)":[165],"tools":[167],"Cytoscape).":[169],"XML":[170],"(Extensible":[171],"text-encoding":[175],"system":[176],"that":[177,190],"human-readable":[179],"compatible":[181],"many":[183],"systems.":[184],"Neo4J":[185,196],"files:":[187],"tab-separated":[188],"files":[189],"can":[191],"be":[192],"easily":[193],"imported":[194],"into":[195],"using":[197],"neo4j-admin":[199],"utils.":[200]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
