{"id":"https://openalex.org/W6949293204","doi":"https://doi.org/10.5281/zenodo.1323831","title":"Nextflow Integration For The Research Object Specification","display_name":"Nextflow Integration For The Research Object Specification","publication_year":2018,"publication_date":"2018-07-30","ids":{"openalex":"https://openalex.org/W6949293204","doi":"https://doi.org/10.5281/zenodo.1323831"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.1323831","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.1323831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.1323831","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Garriga Nogales, Edgar","orcid":"https://orcid.org/0000-0002-9861-5294"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Garriga Nogales, Edgar","raw_affiliation_strings":["Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-9861-5294","affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Di Tommaso, Paolo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Di Tommaso, Paolo","raw_affiliation_strings":["Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":null,"display_name":"Notredame, Cedric","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Notredame, Cedric","raw_affiliation_strings":["Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG).The Barcelona Institute for Science and Technology","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.64230571,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.6312999725341797,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.6312999725341797,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.25850000977516174,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.031300000846385956,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.6998999714851379},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6894000172615051},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6830000281333923},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.5652999877929688},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.4966000020503998},{"id":"https://openalex.org/keywords/component-object-model","display_name":"Component Object Model","score":0.33570000529289246},{"id":"https://openalex.org/keywords/context-model","display_name":"Context model","score":0.3264000117778778}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7519000172615051},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.6998999714851379},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6894000172615051},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6830000281333923},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.5652999877929688},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5342000126838684},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.4966000020503998},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3488999903202057},{"id":"https://openalex.org/C187018787","wikidata":"https://www.wikidata.org/wiki/Q662200","display_name":"Component Object Model","level":3,"score":0.33570000529289246},{"id":"https://openalex.org/C183322885","wikidata":"https://www.wikidata.org/wiki/Q17007702","display_name":"Context model","level":3,"score":0.3264000117778778},{"id":"https://openalex.org/C20894473","wikidata":"https://www.wikidata.org/wiki/Q1116105","display_name":"Object model","level":3,"score":0.3025999963283539},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.29670000076293945},{"id":"https://openalex.org/C116253237","wikidata":"https://www.wikidata.org/wiki/Q1437424","display_name":"Formal specification","level":2,"score":0.2962000072002411},{"id":"https://openalex.org/C89992363","wikidata":"https://www.wikidata.org/wiki/Q5961558","display_name":"Track (disk drive)","level":2,"score":0.28349998593330383},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28290000557899475},{"id":"https://openalex.org/C73752529","wikidata":"https://www.wikidata.org/wiki/Q79872","display_name":"Object-oriented programming","level":2,"score":0.274399995803833},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.271699994802475},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2703000009059906},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.26930001378059387},{"id":"https://openalex.org/C33762810","wikidata":"https://www.wikidata.org/wiki/Q461671","display_name":"Data integrity","level":2,"score":0.26600000262260437}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.1323831","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.1323831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.5281/zenodo.1323831","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.1323831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"<strong>For":[0],"reproducibility":[1],"criteria":[2],"to":[3,16,39,48,102,123],"be":[4,17,146],"met":[5],"in":[6,80],"a":[7,65,91,94,125,132,139],"scientific":[8],"context":[9,82],"an":[10],"increasing":[11],"number":[12,96],"of":[13,51,83,97,131,138],"conditions":[14],"need":[15],"fulfilled.":[18],"These":[19],"conditions,":[20],"explicited":[21],"by":[22],"the":[23,41,74,81,114,129],"FAIR":[24],"principle":[25],"include":[26],"traceability,":[27],"reusability":[28],"and":[29,106,150],"data/methods":[30],"permanent":[31],"availability":[32],"(findable).":[33],"The":[34],"challenge":[35],"is":[36,73,87],"not":[37],"only":[38],"keep":[40,49],"right":[42],"elements":[43],"bundled":[44],"together,":[45],"but":[46],"also":[47],"track":[50],"each":[52],"component":[53],"individual":[54,57],"history":[55],"(including":[56],"updates)":[58],"while":[59],"associating":[60],"every":[61],"computational":[62,98,140],"analysis":[63],"with":[64],"transparent":[66],"source.":[67],"This":[68],"issue,":[69],"known":[70],"as":[71],"provenance,":[72],"one":[75],"we":[76],"have":[77,120],"been":[78],"addressing":[79],"this":[84],"proposal.":[85],"It":[86],"increasingly":[88],"critical,":[89],"at":[90],"time":[92],"when":[93,152],"growing":[95],"procedures":[99],"are":[100],"used":[101],"assess":[103],"medical":[104],"risks":[105],"take":[107],"therapeutic":[108],"decision.":[109],"Our":[110],"solution":[111],"involves":[112],"using":[113],"Research":[115],"Object":[116],"(RO)":[117],"specification":[118],"that":[119,127,143],"allowed":[121],"us":[122],"implement":[124],"method":[126],"enables":[128],"creation":[130],"package":[133],"collecting":[134],"all":[135],"provenance":[136],"metadata":[137],"experiment,":[141],"so":[142],"it":[144],"can":[145],"easily":[147],"shared,":[148],"archived":[149],"reproduced":[151],"needed</strong>":[153]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
