{"id":"https://openalex.org/W6911629576","doi":"https://doi.org/10.5281/zenodo.12697421","title":"DAVI: A Dataset for Automatic Variant Interpretation","display_name":"DAVI: A Dataset for Automatic Variant Interpretation","publication_year":2024,"publication_date":"2024-07-09","ids":{"openalex":"https://openalex.org/W6911629576","doi":"https://doi.org/10.5281/zenodo.12697421"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.12697421","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.12697421","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.12697421","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Longhin, Francesca","orcid":"https://orcid.org/0009-0007-2833-3543"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Longhin, Francesca","raw_affiliation_strings":["University of Padova, Department of Information Engineering, Padova, 35131, Italy"],"raw_orcid":"https://orcid.org/0009-0007-2833-3543","affiliations":[{"raw_affiliation_string":"University of Padova, Department of Information Engineering, Padova, 35131, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Guazzo, Alessandro","orcid":"https://orcid.org/0000-0001-5155-2567"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Guazzo, Alessandro","raw_affiliation_strings":["University of Padova, Department of Information Engineering, Padova, 35131, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5155-2567","affiliations":[{"raw_affiliation_string":"University of Padova, Department of Information Engineering, Padova, 35131, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Longato, Enrico","orcid":"https://orcid.org/0000-0001-5940-645X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Longato, Enrico","raw_affiliation_strings":["University of Padova, Department of Information Engineering, Padova, 35131, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5940-645X","affiliations":[{"raw_affiliation_string":"University of Padova, Department of Information Engineering, Padova, 35131, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ferro, Nicola","orcid":"https://orcid.org/0000-0001-9219-6239"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ferro, Nicola","raw_affiliation_strings":["University of Padova, Department of Information Engineering, Padova, 35131, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9219-6239","affiliations":[{"raw_affiliation_string":"University of Padova, Department of Information Engineering, Padova, 35131, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":null,"display_name":"Di Camillo, Barbara","orcid":"https://orcid.org/0000-0001-8415-4688"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Di Camillo, Barbara","raw_affiliation_strings":["University of Padova, Department of Information Engineering, Padova, 35131, Italy","University of Padova, Department of Comparative Biomedicine and Food Science, Legnaro (PD), 35020, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8415-4688","affiliations":[{"raw_affiliation_string":"University of Padova, Department of Information Engineering, Padova, 35131, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"University of Padova, Department of Comparative Biomedicine and Food Science, Legnaro (PD), 35020, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6841999888420105},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5924999713897705},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.40630000829696655},{"id":"https://openalex.org/keywords/genetic-data","display_name":"Genetic data","score":0.40389999747276306},{"id":"https://openalex.org/keywords/genetic-variants","display_name":"Genetic variants","score":0.39750000834465027}],"concepts":[{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6841999888420105},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5940999984741211},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5924999713897705},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5802000164985657},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5160999894142151},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.40630000829696655},{"id":"https://openalex.org/C2993807623","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genetic data","level":3,"score":0.40389999747276306},{"id":"https://openalex.org/C2993967602","wikidata":"https://www.wikidata.org/wiki/Q5532932","display_name":"Genetic variants","level":4,"score":0.39750000834465027},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.35580000281333923},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.353300005197525},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3352000117301941},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.30570000410079956},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.30219998955726624},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26930001378059387}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.12697421","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.12697421","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.12697421","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.12697421","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"The":[0],"analysis":[1],"of":[2,25,31,35,47,66,85,116,144],"an":[3],"individual\u2019s":[4],"genetic":[5,9],"material":[6],"may":[7],"uncover":[8],"variants,":[10],"which":[11,52],"can":[12],"be":[13],"classified":[14,160],"as":[15,161],"disease-causing":[16],"(pathogenic)":[17],"or":[18,36],"benign.":[19],"Identifying":[20],"pathogenic":[21],"variants":[22,26],"among":[23],"millions":[24],"relies":[27],"on":[28],"the":[29,44,56,71,82,134,145],"research":[30],"evidence":[32,67,123,141],"in":[33,70],"support":[34],"against":[37],"variant":[38],"pathogenicity,":[39],"a":[40,77,99,114],"process":[41],"regulated":[42],"by":[43],"American":[45],"College":[46],"Molecular":[48],"Genetics":[49],"(ACMG)":[50],"guidelines,":[51],"leverages":[53],"data":[54],"from":[55,108],"scientific":[57],"literature.":[58],"Despite":[59],"recent":[60],"improvements":[61],"towards":[62],"automation,":[63],"searching":[64],"shreds":[65],"for":[68,95,113],"pathogenicity":[69],"literature":[72],"still":[73],"requires":[74],"manual":[75],"curation,":[76],"time-consuming":[78],"process,":[79],"due":[80],"to":[81],"ever-growing":[83],"number":[84],"published":[86],"papers.":[87],"In":[88],"this":[89],"work,":[90],"we":[91],"built":[92],"DAVI":[93,174],"(Dataset":[94],"Automatic":[96],"Variant":[97],"Interpretation),":[98],"reliable,":[100],"manually":[101],"curated":[102],"dataset":[103],"comprising":[104],"1239":[105],"sentences":[106,120],"extracted":[107],"311":[109],"(variant,":[110,150,164,182],"article)":[111,151,165,183],"associations":[112,152,166],"pool":[115],"41":[117],"variants.":[118],"597":[119],"contain":[121,139],"(positive)":[122],"activating":[124,142],"two":[125,146],"opposing":[126],"ACGM":[127,148],"criteria,":[128],"namely":[129],"PS3":[130],"and":[131,179],"BS3,":[132],"while":[133,163],"remaining":[135],"642":[136],"do":[137],"not":[138],"(negative)":[140],"either":[143],"considered":[147],"criteria.":[149],"containing":[153,167],"at":[154],"least":[155],"one":[156],"positive":[157,169,178],"sentence":[158,170],"are":[159,171],"positive,":[162],"any":[168],"negative.":[172],"Therefore":[173],"also":[175],"contains":[176],"154":[177],"157":[180],"negative":[181],"associations.":[184]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
