{"id":"https://openalex.org/W6911457472","doi":"https://doi.org/10.5281/zenodo.11391567","title":"A Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Graph Genomes","display_name":"A Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Graph Genomes","publication_year":2024,"publication_date":"2024-05-29","ids":{"openalex":"https://openalex.org/W6911457472","doi":"https://doi.org/10.5281/zenodo.11391567"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.11391567","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11391567","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.11391567","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Groza, Cristian","orcid":"https://orcid.org/0000-0001-6624-5404"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Groza, Cristian","raw_affiliation_strings":["McGill University"],"raw_orcid":"https://orcid.org/0000-0001-6624-5404","affiliations":[{"raw_affiliation_string":"McGill University","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chen, Xun","orcid":"https://orcid.org/0000-0003-0327-1888"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chen, Xun","raw_affiliation_strings":["Kyoto University"],"raw_orcid":"https://orcid.org/0000-0003-0327-1888","affiliations":[{"raw_affiliation_string":"Kyoto University","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wheeler, Travis","orcid":"https://orcid.org/0000-0003-2004-1785"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wheeler, Travis","raw_affiliation_strings":["University of Arizona"],"raw_orcid":"https://orcid.org/0000-0003-2004-1785","affiliations":[{"raw_affiliation_string":"University of Arizona","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bourque, Guillaume","orcid":"https://orcid.org/0000-0002-3933-9656"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bourque, Guillaume","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-3933-9656","affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Goubert, Cl\u00e9ment","orcid":"https://orcid.org/0000-0001-8034-5559"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Goubert, Cl\u00e9ment","raw_affiliation_strings":["McGill University","University of Arizona"],"raw_orcid":"https://orcid.org/0000-0001-8034-5559","affiliations":[{"raw_affiliation_string":"McGill University","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"University of Arizona","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.7099000215530396},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.6194999814033508},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5942999720573425},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5494999885559082},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5239999890327454},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.3467000126838684},{"id":"https://openalex.org/keywords/element","display_name":"Element (criminal law)","score":0.3237000107765198}],"concepts":[{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.7099000215530396},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6456000208854675},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.6194999814033508},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5942999720573425},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5494999885559082},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5239999890327454},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4187999963760376},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40369999408721924},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.349700003862381},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.3467000126838684},{"id":"https://openalex.org/C200288055","wikidata":"https://www.wikidata.org/wiki/Q2621792","display_name":"Element (criminal law)","level":2,"score":0.3237000107765198},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3082999885082245},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.30239999294281006},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29260000586509705},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.2919999957084656},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.29019999504089355},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2824999988079071},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.26109999418258667},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2538999915122986}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.11391567","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11391567","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.11391567","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11391567","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"GraffiTE_analyses_scripts_and_data_052924":[0],"**********************************************":[1],"Contact/info:":[2],"goubert.clement@gmail.com":[3],"Figures:":[4],"^^^^^^This":[5],"directory":[6,26],"contains":[7,27],"all":[8],"the":[9,17,21,35,40,49,53,60,76,82],"files":[10],"and":[11,55,70],"R":[12],"script":[13,72],"necessary":[14],"to":[15,48,74],"reproduce":[16],"data":[18],"figures":[19],"of":[20,59],"manuscript.":[22,41,61],"GraffiTE":[23,33],"pMEs":[24,29],"datasets:^^^^^^^^^^^^^^^^^^This":[25],"new":[28],"datasets":[30,43],"produced":[31],"by":[32],"for":[34],"different":[36],"models":[37],"presented":[38],"in":[39,52,81],"All":[42],"have":[44],"been":[45],"filtered":[46],"according":[47],"descriptions":[50],"given":[51],"Methods":[54,57],"Supplementary":[56],"sections":[58],"These":[62],"data,":[63],"along":[64],"with":[65],"more":[66],"intermediate":[67],"file,":[68],"metadata":[69],"analysis":[71],"used":[73],"produce":[75],"figure":[77],"are":[78],"also":[79],"available":[80],"\"Figures\"":[83],"directory.":[84]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
