{"id":"https://openalex.org/W6930317759","doi":"https://doi.org/10.5281/zenodo.11067998","title":"EnzChemRED, a rich enzyme chemistry relation extraction dataset","display_name":"EnzChemRED, a rich enzyme chemistry relation extraction dataset","publication_year":2024,"publication_date":"2024-04-25","ids":{"openalex":"https://openalex.org/W6930317759","doi":"https://doi.org/10.5281/zenodo.11067998"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.11067998","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11067998","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.11067998","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Lai, Po-Ting","orcid":"https://orcid.org/0000-0003-2025-318X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lai, Po-Ting","raw_affiliation_strings":["National Center for Biotechnology Information"],"raw_orcid":"https://orcid.org/0000-0003-2025-318X","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Coudert, Elisabeth","orcid":"https://orcid.org/0000-0002-5979-8382"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Coudert, Elisabeth","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0002-5979-8382","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Aimo, Lucila","orcid":"https://orcid.org/0000-0003-0943-6401"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Aimo, Lucila","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0003-0943-6401","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Axelsen, Kristian","orcid":"https://orcid.org/0000-0003-3889-2879"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Axelsen, Kristian","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0003-3889-2879","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Breuza, Lionel","orcid":"https://orcid.org/0000-0002-8075-8625"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Breuza, Lionel","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0002-8075-8625","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"de Castro, Edouard","orcid":"https://orcid.org/0000-0001-5436-7383"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"de Castro, Edouard","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0001-5436-7383","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Feuermann, Marc","orcid":"https://orcid.org/0000-0002-4187-2863"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Feuermann, Marc","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0002-4187-2863","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Morgat, Anne","orcid":"https://orcid.org/0000-0002-1216-2969"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Morgat, Anne","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0002-1216-2969","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pourcel, Lucille","orcid":"https://orcid.org/0000-0003-1522-9900"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pourcel, Lucille","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0003-1522-9900","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pedruzzi, Ivo","orcid":"https://orcid.org/0000-0001-8561-7170"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pedruzzi, Ivo","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0001-8561-7170","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Poux, Sylvain","orcid":"https://orcid.org/0000-0001-7299-6685"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Poux, Sylvain","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0001-7299-6685","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Redaschi, Nicole","orcid":"https://orcid.org/0000-0001-8890-2268"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Redaschi, Nicole","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0001-8890-2268","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rivoire, Catherine","orcid":"https://orcid.org/0000-0002-5979-8382"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rivoire, Catherine","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0002-5979-8382","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sveshnikova, Anastasia","orcid":"https://orcid.org/0000-0001-9291-0965"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sveshnikova, Anastasia","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0001-9291-0965","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei, Chih-Hsuan","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei, Chih-Hsuan","raw_affiliation_strings":["National Center for Biotechnology Information"],"raw_orcid":"https://orcid.org/0000-0001-5094-7321","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Leaman, Robert","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leaman, Robert","raw_affiliation_strings":["National Center for Biotechnology Information"],"raw_orcid":"https://orcid.org/0000-0003-3296-5766","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Luo, Ling","orcid":"https://orcid.org/0000-0002-5141-0259"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Luo, Ling","raw_affiliation_strings":["Dalian University of Technology"],"raw_orcid":"https://orcid.org/0000-0002-5141-0259","affiliations":[{"raw_affiliation_string":"Dalian University of Technology","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Lu, Zhiyong","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lu, Zhiyong","raw_affiliation_strings":["National Center for Biotechnology Information"],"raw_orcid":"https://orcid.org/0000-0001-9998-916X","affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":null,"display_name":"Bridge, Alan","orcid":"https://orcid.org/0000-0003-2148-9135"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bridge, Alan","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics"],"raw_orcid":"https://orcid.org/0000-0003-2148-9135","affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.718500018119812},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5123000144958496},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.46070000529289246},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.439300000667572},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.38960000872612},{"id":"https://openalex.org/keywords/bridge","display_name":"Bridge (graph theory)","score":0.37040001153945923},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.3578000068664551}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.718500018119812},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6258999705314636},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5123000144958496},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.46070000529289246},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.439300000667572},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43050000071525574},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.38960000872612},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38040000200271606},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.37040001153945923},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.3578000068664551},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.3521000146865845},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.329800009727478},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.326200008392334},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.31529998779296875},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.30329999327659607},{"id":"https://openalex.org/C2777220311","wikidata":"https://www.wikidata.org/wiki/Q6423340","display_name":"Knowledge acquisition","level":2,"score":0.3003000020980835},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.289900004863739},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2849000096321106},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.2833999991416931},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.26669999957084656},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.26600000262260437},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2502000033855438}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.11067998","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11067998","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.11067998","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.11067998","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[{"score":0.7264550924301147,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"Expert":[1],"curation":[2,160],"is":[3],"essential":[4],"to":[5,50,106,117,143,148,158,183,193],"capture":[6],"knowledge":[7],"of":[8,26,54,72,153,187],"enzyme":[9,68,154],"functions":[10,155],"from":[11,197],"the":[12,24,52,82,119,130,165,185],"scientific":[13],"literature":[14,157],"in":[15,78,111,122,156,162],"FAIR":[16],"open":[17],"knowledgebases":[18],"but":[19],"cannot":[20],"keep":[21],"pace":[22],"with":[23,100],"rate":[25],"new":[27,30,45],"discoveries":[28],"and":[29,47,81,91,109,116,129,164,174,201],"publications.":[31],"In":[32],"this":[33],"work":[34],"we":[35],"present":[36],"EnzChemRED,":[37],"for":[38,199],"Enzyme":[39],"Chemistry":[40],"Relation":[41],"Extraction":[42],"Dataset,":[43],"a":[44,150],"training":[46],"benchmarking":[48],"dataset":[49],"support":[51,184],"development":[53,186],"Natural":[55],"Language":[56],"Processing":[57],"(NLP)":[58,191],"methods":[59,142,192],"such":[60],"as":[61],"(large)":[62],"language":[63,98,189],"models":[64,99],"that":[65,96,132],"can":[66],"assist":[67],"curation.":[69],"EnzChemRED":[70,101],"consists":[71],"1,210":[73],"expert":[74],"curated":[75],"PubMed":[76,146],"abstracts":[77,144],"which":[79,123],"enzymes":[80,131],"chemical":[83,120],"reactions":[84,196],"they":[85,124],"catalyze":[86,133],"are":[87],"annotated":[88],"using":[89],"UniProtKB":[90,163],"ChEBI":[92],"identifiers.":[93],"We":[94,139],"show":[95],"fine-tuning":[97],"significantly":[102],"boosts":[103],"their":[104],"ability":[105],"identify":[107],"proteins":[108],"chemicals":[110],"text":[112,198],"(86.30%":[113],"F1":[114,127,137],"score)":[115],"extract":[118],"conversions":[121,135],"participate":[125],"(86.66%":[126],"score),":[128],"those":[134],"(83.79%":[136],"score).":[138],"apply":[140],"our":[141],"at":[145],"scale":[147],"create":[149],"draft":[151],"map":[152],"guide":[159],"efforts":[161],"reaction":[166],"knowledgebase":[167],"Rhea.":[168],"Corresponding":[169],"authors:":[170],"Alan":[171],"Bridge":[172],"(alan.bridge@sib.swiss)":[173],"Zhiyong":[175],"Lu":[176],"(zhiyong.lu@nih.gov)":[177],"Content":[178],"This":[179],"repository":[180],"contains":[181],"data":[182],"natural":[188],"processing":[190],"mine":[194],"biochemical":[195],"Rhea":[200],"UniProt.":[202]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
