{"id":"https://openalex.org/W6930282679","doi":"https://doi.org/10.5281/zenodo.10996334","title":"tBiomed: Semantic Table Annotations Benchmark for Biomedical Domain","display_name":"tBiomed: Semantic Table Annotations Benchmark for Biomedical Domain","publication_year":2024,"publication_date":"2024-04-19","ids":{"openalex":"https://openalex.org/W6930282679","doi":"https://doi.org/10.5281/zenodo.10996334"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10996334","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10996334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10996334","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Abdelmageed, Nora","orcid":"https://orcid.org/0000-0002-1405-6860"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Abdelmageed, Nora","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jim\u00e8nez-Ruiz, Ernesto","orcid":"https://orcid.org/0000-0002-9083-4599"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jim\u00e8nez-Ruiz, Ernesto","raw_affiliation_strings":["City, University of London, UK"],"affiliations":[{"raw_affiliation_string":"City, University of London, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hassanzadeh, Oktie","orcid":"https://orcid.org/0000-0001-5307-9857"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hassanzadeh, Oktie","raw_affiliation_strings":["IBM Research, USA"],"affiliations":[{"raw_affiliation_string":"IBM Research, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":null,"display_name":"K\u00f6nig-Ries, Birgitta","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K\u00f6nig-Ries, Birgitta","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11902","display_name":"Intelligent Tutoring Systems and Adaptive Learning","score":0.10239999741315842,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11902","display_name":"Intelligent Tutoring Systems and Adaptive Learning","score":0.10239999741315842,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10906","display_name":"AI-based Problem Solving and Planning","score":0.027499999850988388,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13034","display_name":"Information Systems Education and Curriculum Development","score":0.0272000003606081,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7766000032424927},{"id":"https://openalex.org/keywords/column","display_name":"Column (typography)","score":0.6176000237464905},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.6154000163078308},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.527899980545044},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.5081999897956848},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4968000054359436},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4101000130176544},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.36880001425743103}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7766000032424927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.754800021648407},{"id":"https://openalex.org/C2780551164","wikidata":"https://www.wikidata.org/wiki/Q2306599","display_name":"Column (typography)","level":3,"score":0.6176000237464905},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.6154000163078308},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.527899980545044},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5131999850273132},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.5081999897956848},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4968000054359436},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4101000130176544},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3977999985218048},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.36880001425743103},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.3321000039577484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3296000063419342},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.32850000262260437},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.31850001215934753},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.3102000057697296},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.296099990606308},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.29420000314712524},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.28610000014305115},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.28290000557899475},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.2800999879837036},{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.2694999873638153},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.2653999924659729}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10996334","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10996334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10996334","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10996334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.46807000041007996,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"tBiomed":[0,63,80],"is":[1,12,64,120],"a":[2,36,47,58,72,92,165,222],"dataset":[3,119],"for":[4,14,149],"tabular":[5],"data":[6,54,98,112,138],"to":[7,161,179,193,221],"knowledge":[8,60,212],"graph":[9,61],"matching.":[10],"It":[11],"derived":[13],"the":[15,25,41,96,102,105,125,129,140,144,158,168,182,196,204,210,218],"Biodiversity":[16],"domain":[17],"and":[18,84],"has":[19],"two":[20,69],"types":[21],"of":[22,38,71,75,95,101,104,117,128,139],"tables.":[23],"On":[24,40],"one":[26],"hand,":[27,43],"Horizontal":[28],"Relational":[29],"Tables":[30,45],"are":[31],"where":[32],"each":[33],"table":[34,151,160,177,191],"represents":[35],"collection":[37],"entities.":[39],"other":[42],"Entity":[44,172],"represent":[46],"single":[48],"entity.":[49],"We":[50,123,131],"supported":[51,147],"ground":[52,110,136],"truth":[53,111,137],"from":[55,167,181,195,209],"Wikidata":[56],"as":[57],"target":[59,169,183,197,211],"(KG).":[62],"generated":[65],"by":[66],"KG2Tables":[67],"using":[68],"levels":[70],"recursive":[73],"hierarchy":[74],"related":[76],"concepts":[77],"in":[78,143],"Wikidata.":[79],"contains":[81,90],"26,778":[82],"entity":[83,163,224],"horizontal":[85],"tables,":[86],"while":[87],"this":[88,118,134],"repository":[89,135],"only":[91],"validation":[93],"fold":[94],"original":[97],"representing":[99],"20%":[100],"total":[103],"entire":[106,159,219],"benchmark":[107],"with":[108],"its":[109],"(gt).":[113],"The":[114,146],"Full":[115],"size":[116],"1":[121],"GB.":[122],"included":[124],"full":[126],"version":[127],"dataset.":[130],"will":[132],"update":[133],"test":[141],"set":[142],"Future.":[145],"tasks":[148],"semantic":[150],"annotations":[152],"are:":[153],"Topic":[154],"Detection":[155],"(TD)":[156],"links":[157,189],"an":[162],"or":[164,225],"class":[166],"KG.":[170,184,198],"Cell":[171],"Annotation":[173,187,201,215],"(CEA)":[174],"maps":[175],"individual":[176,190],"cells":[178],"entities":[180],"Column":[185,199],"Type":[186],"(CTA)":[188],"columns":[192],"classes":[194],"Property":[200],"(CPA)":[202],"detects":[203],"relations":[205],"between":[206],"column":[207],"pairs":[208],"graph.":[213],"Row":[214],"(RA)":[216],"annotates":[217],"row":[220],"KG":[223],"property.":[226]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
