{"id":"https://openalex.org/W6911436804","doi":"https://doi.org/10.5281/zenodo.10967397","title":"Genie: The First Open-Source ISO/IEC Encoder for Genomic Data","display_name":"Genie: The First Open-Source ISO/IEC Encoder for Genomic Data","publication_year":2023,"publication_date":"2023-08-07","ids":{"openalex":"https://openalex.org/W6911436804","doi":"https://doi.org/10.5281/zenodo.10967397"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10967397","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10967397","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"type":"software","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10967397","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"M\u00fcntefering, Fabian","orcid":"https://orcid.org/0000-0002-4174-9662"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M\u00fcntefering, Fabian","raw_affiliation_strings":["Leibniz University Hannover"],"raw_orcid":"https://orcid.org/0000-0002-4174-9662","affiliations":[{"raw_affiliation_string":"Leibniz University Hannover","institution_ids":["https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Adhisantoso, Yeremia Gunawan","orcid":"https://orcid.org/0000-0001-8132-5007"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adhisantoso, Yeremia Gunawan","raw_affiliation_strings":["Leibniz University Hannover"],"raw_orcid":"https://orcid.org/0000-0001-8132-5007","affiliations":[{"raw_affiliation_string":"Leibniz University Hannover","institution_ids":["https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chandak, Shubham","orcid":"https://orcid.org/0000-0002-1130-9762"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chandak, Shubham","raw_affiliation_strings":["Stanford University"],"raw_orcid":"https://orcid.org/0000-0002-1130-9762","affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ostermann, J\u00f6rn","orcid":"https://orcid.org/0000-0002-6743-3324"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ostermann, J\u00f6rn","raw_affiliation_strings":["Leibniz University Hannover"],"raw_orcid":"https://orcid.org/0000-0002-6743-3324","affiliations":[{"raw_affiliation_string":"Leibniz University Hannover","institution_ids":["https://openalex.org/I114112103"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hernaez, Mikel","orcid":"https://orcid.org/0000-0003-0443-2305"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Hernaez, Mikel","raw_affiliation_strings":["University of Navarra"],"raw_orcid":"https://orcid.org/0000-0003-0443-2305","affiliations":[{"raw_affiliation_string":"University of Navarra","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"last","author":{"id":null,"display_name":"Voges, Jan","orcid":"https://orcid.org/0000-0002-6080-660X"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Voges, Jan","raw_affiliation_strings":["Leibniz University Hannover"],"raw_orcid":"https://orcid.org/0000-0002-6080-660X","affiliations":[{"raw_affiliation_string":"Leibniz University Hannover","institution_ids":["https://openalex.org/I114112103"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.8707000017166138},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.7164999842643738},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.6180999875068665},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.597100019454956},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.49720001220703125},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.48420000076293945},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.4293000102043152},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.4047999978065491}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.8707000017166138},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.7164999842643738},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7132999897003174},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.6180999875068665},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.597100019454956},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.49720001220703125},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.48420000076293945},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4657000005245209},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.4293000102043152},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.4047999978065491},{"id":"https://openalex.org/C2983609787","wikidata":"https://www.wikidata.org/wiki/Q10534782","display_name":"Software implementation","level":3,"score":0.4025000035762787},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3878999948501587},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.3643999993801117},{"id":"https://openalex.org/C60478076","wikidata":"https://www.wikidata.org/wiki/Q3036835","display_name":"Reference data","level":2,"score":0.3547999858856201},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.33889999985694885},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.3273000121116638},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.32089999318122864},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.31290000677108765},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.3100000023841858},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.2962999939918518},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.295199990272522},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27880001068115234},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.271699994802475}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10967397","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10967397","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10967397","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10967397","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.43187424540519714,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Genie":[0,102],"For":[1],"the":[2,6,45,49,59,72,86,96,120,124,130,134],"last":[3],"two":[4],"decades,":[5],"amount":[7],"of":[8,48,58,71,129],"genomic":[9,92],"data":[10,34,93,132],"produced":[11],"by":[12],"scientific":[13,69],"and":[14,31,38,42,127],"medical":[15],"applications":[16],"has":[17],"been":[18],"growing":[19],"at":[20],"a":[21],"rapid":[22],"pace.":[23],"To":[24],"enable":[25],"software":[26],"solutions":[27],"that":[28,90,101],"analyze,":[29],"process,":[30],"transmit":[32],"these":[33],"in":[35,53],"an":[36],"efficient":[37],"interoperable":[39],"way,":[40],"ISO":[41],"IEC":[43],"released":[44],"first":[46,87],"version":[47],"compression":[50,105],"standard":[51,60,73],"MPEG-G":[52,97],"2019.":[54],"However,":[55],"non-proprietary":[56],"implementations":[57],"are":[61],"not":[62],"openly":[63],"available":[64],"so":[65],"far,":[66],"limiting":[67],"fair":[68],"assessment":[70],"and,":[74],"therefore,":[75],"hindering":[76],"its":[77,117],"broad":[78],"adoption.":[79],"In":[80],"this":[81],"paper,":[82],"we":[83],"present":[84],"Genie,":[85],"open-source":[88],"encoder":[89],"compresses":[91],"according":[94],"to":[95],"standard.":[98],"We":[99],"demonstrate":[100],"reaches":[103],"state-of-the-art":[104],"ratios":[106],"while":[107],"offering":[108],"interoperability":[109],"with":[110],"any":[111],"other":[112],"standard-compliant":[113],"decoder":[114],"independent":[115],"from":[116],"manufacturer.":[118],"Finally,":[119],"ISO/IEC":[121],"ecosystem":[122],"ensures":[123],"long-term":[125],"sustainability":[126],"decodability":[128],"compressed":[131],"through":[133],"ISO/IEC-supported":[135],"reference":[136],"decoder.":[137]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}