{"id":"https://openalex.org/W6892569258","doi":"https://doi.org/10.5281/zenodo.10610388","title":"Supporting data and code for \"Data-driven recombination detection in viral genomes\"","display_name":"Supporting data and code for \"Data-driven recombination detection in viral genomes\"","publication_year":2024,"publication_date":"2024-02-02","ids":{"openalex":"https://openalex.org/W6892569258","doi":"https://doi.org/10.5281/zenodo.10610388"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10610388","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10610388","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10610388","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Alfonsi, Tommaso","orcid":"https://orcid.org/0000-0002-4707-8425"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alfonsi, Tommaso","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4707-8425","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bernasconi, Anna","orcid":"https://orcid.org/0000-0001-8016-5750"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bernasconi, Anna","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8016-5750","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chiara, Matteo","orcid":"https://orcid.org/0000-0003-3983-4961"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Chiara, Matteo","raw_affiliation_strings":["Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3983-4961","affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ceri, Stefano","orcid":"https://orcid.org/0000-0003-0671-2415"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ceri, Stefano","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0671-2415","affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.6692000031471252},{"id":"https://openalex.org/keywords/preprint","display_name":"Preprint","score":0.5418000221252441},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5411999821662903},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4007999897003174},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.3158000111579895},{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.3154999911785126}],"concepts":[{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.6692000031471252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6230000257492065},{"id":"https://openalex.org/C43169469","wikidata":"https://www.wikidata.org/wiki/Q580922","display_name":"Preprint","level":2,"score":0.5418000221252441},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5411999821662903},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.40130001306533813},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4007999897003174},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37529999017715454},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.367900013923645},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33340001106262207},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.3158000111579895},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.3154999911785126},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.311599999666214},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.31119999289512634},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.3109000027179718},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3091000020503998},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.29019999504089355},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.2648000121116638},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2574999928474426}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10610388","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10610388","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10610388","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10610388","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Data":[0],"and":[1,62,79,83],"code":[2,52],"for":[3],"preprint":[4],"paperData-driven":[5],"recombination":[6],"detection":[7],"in":[8],"viral":[9],"genomes.":[10],"Alfonsi":[11],"T.,":[12],"Bernasconi":[13],"A.,":[14],"Chiara":[15],"M.,":[16],"Ceri":[17],"S..":[18],"bioRxiv":[19],"2023.06.05.543733;":[20],"doi:":[21],"https://doi.org/10.1101/2023.06.05.543733.":[22],"The":[23,37],"repository":[24],"contains:":[25],"-":[26,36],"A":[27],"manuscript_supplementary_material,":[28],"containing":[29,69],"also":[30],"a":[31,41,54,66,73,84],"guide":[32,48],"to":[33],"the":[34,70],"files":[35],"RecombinHunt":[38],"application,":[39],"with:":[40],"README":[42],"file":[43],"including":[44],"system":[45],"requirements,":[46],"installation":[47],"(running":[49],"recombinhunt-3.3.3-py3-none-any.whl),":[50],"example":[51,63],"snippets;":[53],"demo":[55],"folder":[56,68,75,86],"with":[57,76,87],"Jupyter":[58],"notebook":[59],"(Python":[60],"code)":[61],"input/output":[64],"datasets;":[65],"src":[67],"source":[71],"code;":[72],"environments":[74],"preprocessed":[77],"datasets":[78],"lineage/mutation":[80],"probability":[81],"tables":[82],"validation_data":[85],"supporting":[88],"files.":[89]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
