{"id":"https://openalex.org/W4394029848","doi":"https://doi.org/10.5281/zenodo.10512460","title":"Discovering and exploring the hidden diversity of the human gut viruses using highly enriched virome samples.","display_name":"Discovering and exploring the hidden diversity of the human gut viruses using highly enriched virome samples.","publication_year":2024,"publication_date":"2024-01-15","ids":{"openalex":"https://openalex.org/W4394029848","doi":"https://doi.org/10.5281/zenodo.10512460"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10512460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10512460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10512460","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015174011","display_name":"Moreno Zolfo","orcid":"https://orcid.org/0000-0001-6661-4046"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT","JP"],"is_corresponding":false,"raw_author_name":"Zolfo, Moreno","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy","Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan"],"raw_orcid":"https://orcid.org/0000-0001-6661-4046","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","institution_ids":["https://openalex.org/I142637625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040581490","display_name":"Andrea Silverj","orcid":"https://orcid.org/0000-0002-5452-1042"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silverj, Andrea","raw_affiliation_strings":["Center Agriculture Food Environment (C3A), University of Trento, Italy","Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy","Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0002-5452-1042","affiliations":[{"raw_affiliation_string":"Center Agriculture Food Environment (C3A), University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy","institution_ids":["https://openalex.org/I103225651"]},{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041476144","display_name":"Aitor Blanco\u2010M\u00edguez","orcid":"https://orcid.org/0000-0001-7386-5572"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Blanco-M\u00edguez, Aitor","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7386-5572","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011502535","display_name":"Paolo Manghi","orcid":"https://orcid.org/0000-0003-0846-6529"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manghi, Paolo","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0846-6529","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023747376","display_name":"Omar Rota\u2010Stabelli","orcid":"https://orcid.org/0000-0002-0030-7788"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rota-Stabelli, Omar","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy","Center Agriculture Food Environment (C3A), University of Trento, Italy","Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0002-0030-7788","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Center Agriculture Food Environment (C3A), University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071783225","display_name":"Vitor Heidrich","orcid":"https://orcid.org/0000-0001-6617-9187"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Heidrich, Vitor","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6617-9187","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jensen, Jordan","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Jensen, Jordan","raw_affiliation_strings":["Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","Department of Twin Research & Genetic Epidemiology, King's College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Twin Research & Genetic Epidemiology, King's College London, London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Maharjan, Sagun","orcid":"https://orcid.org/0000-0001-8369-2804"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Maharjan, Sagun","raw_affiliation_strings":["Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","Center of Biostatistics, Epidemiology and Public Health, Department of Clinical and Biological Sciences, University of Turin, Turin, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8369-2804","affiliations":[{"raw_affiliation_string":"Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Center of Biostatistics, Epidemiology and Public Health, Department of Clinical and Biological Sciences, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Franzosa, Eric","orcid":"https://orcid.org/0000-0002-8798-7068"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Franzosa, Eric","raw_affiliation_strings":["Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0002-8798-7068","affiliations":[{"raw_affiliation_string":"Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079619000","display_name":"Cristina Menni","orcid":"https://orcid.org/0000-0001-9790-0571"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["GB","IT"],"is_corresponding":false,"raw_author_name":"Menni, Cristina","raw_affiliation_strings":["Department of Twin Research & Genetic Epidemiology, King's College London, London, UK","Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9790-0571","affiliations":[{"raw_affiliation_string":"Department of Twin Research & Genetic Epidemiology, King's College London, London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059983518","display_name":"Alessia Visconti","orcid":"https://orcid.org/0000-0003-4144-2019"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Visconti, Alessia","raw_affiliation_strings":["Center of Biostatistics, Epidemiology and Public Health, Department of Clinical and Biological Sciences, University of Turin, Turin, Italy","Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4144-2019","affiliations":[{"raw_affiliation_string":"Center of Biostatistics, Epidemiology and Public Health, Department of Clinical and Biological Sciences, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028950712","display_name":"Federica Pinto","orcid":"https://orcid.org/0000-0002-4539-4811"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pinto, Federica","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4539-4811","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070464616","display_name":"Matteo Ciciani","orcid":"https://orcid.org/0000-0003-2045-5435"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["IT","JP"],"is_corresponding":false,"raw_author_name":"Ciciani, Matteo","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy","Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","The Systems Biology Institute (SBI), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0003-2045-5435","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"The Systems Biology Institute (SBI), Tokyo, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Huttenhower, Curtis","orcid":"https://orcid.org/0000-0002-1110-0096"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Huttenhower, Curtis","raw_affiliation_strings":["Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","School of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan","Metagen Therapeutics, Inc., Yamagata, Japan","Metagen, Inc., Yamagata, Japan","Digzyme, Inc., Tokyo, Japan","Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan"],"raw_orcid":"https://orcid.org/0000-0002-1110-0096","affiliations":[{"raw_affiliation_string":"Harvard Chan Microbiome in Public Health Center, Harvard T.H. Chan School of Public Health, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Metagen Therapeutics, Inc., Yamagata, Japan","institution_ids":[]},{"raw_affiliation_string":"Metagen, Inc., Yamagata, Japan","institution_ids":[]},{"raw_affiliation_string":"Digzyme, Inc., Tokyo, Japan","institution_ids":[]},{"raw_affiliation_string":"Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","institution_ids":["https://openalex.org/I142637625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089150427","display_name":"Anna Cereseto","orcid":"https://orcid.org/0000-0003-4453-2597"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cereseto, Anna","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy","Department of Experimental Oncology, IEO European Institute of Oncology IRCCS, Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4453-2597","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Department of Experimental Oncology, IEO European Institute of Oncology IRCCS, Milan, Italy","institution_ids":["https://openalex.org/I6141010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023870348","display_name":"Francesco Asnicar","orcid":"https://orcid.org/0000-0003-3732-1468"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Asnicar, Francesco","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3732-1468","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086835862","display_name":"Hiroaki Kitano","orcid":"https://orcid.org/0000-0002-3589-1953"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kitano, Hiroaki","raw_affiliation_strings":["Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","The Systems Biology Institute (SBI), Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0002-3589-1953","affiliations":[{"raw_affiliation_string":"Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"The Systems Biology Institute (SBI), Tokyo, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034753115","display_name":"Takuji Yamada","orcid":"https://orcid.org/0000-0002-9622-1849"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yamada, Takuji","raw_affiliation_strings":["Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","School of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan","Metagen, Inc., Yamagata, Japan","Metagen Therapeutics, Inc., Yamagata, Japan","Digzyme, Inc., Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0002-9622-1849","affiliations":[{"raw_affiliation_string":"Integrated Open Systems Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Metagen, Inc., Yamagata, Japan","institution_ids":[]},{"raw_affiliation_string":"Metagen Therapeutics, Inc., Yamagata, Japan","institution_ids":[]},{"raw_affiliation_string":"Digzyme, Inc., Tokyo, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068576885","display_name":"Nicola Segata","orcid":"https://orcid.org/0000-0002-1583-5794"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Segata, Nicola","raw_affiliation_strings":["Department CIBIO - University of Trento, Italy","Department of Experimental Oncology, IEO European Institute of Oncology IRCCS, Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0002-1583-5794","affiliations":[{"raw_affiliation_string":"Department CIBIO - University of Trento, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Department of Experimental Oncology, IEO European Institute of Oncology IRCCS, Milan, Italy","institution_ids":["https://openalex.org/I6141010"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11243","display_name":"Respiratory viral infections research","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-virome","display_name":"Human virome","score":0.991885781288147},{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.5724244713783264},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5580278038978577},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.434578001499176},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43085557222366333},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4301055073738098},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24182197451591492},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08222723007202148},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.05819711089134216}],"concepts":[{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.991885781288147},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.5724244713783264},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5580278038978577},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.434578001499176},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43085557222366333},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4301055073738098},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24182197451591492},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08222723007202148},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.05819711089134216},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10512460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10512460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10512460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10512460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1994097943","display_name":null,"funder_award_id":"716575","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2260345425","display_name":"International Human Microbiome Coordination and Support Action","funder_award_id":"964590","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2633149742","display_name":"Gut OncoMicrobiome Signatures (GOMS) associated with cancer incidence, prognosis and prediction of treatment response.","funder_award_id":"825410","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2820292300","display_name":null,"funder_award_id":"JPMJCR19U3","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G3561321662","display_name":null,"funder_award_id":"JP16H06279","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4328076566","display_name":null,"funder_award_id":"101045015","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4672315780","display_name":"Microbiome Applications for Sustainable food systems through Technologies and EnteRprise","funder_award_id":"818368","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2519363532","https://openalex.org/W3182597671","https://openalex.org/W4220807255","https://openalex.org/W4313305812","https://openalex.org/W3216950677","https://openalex.org/W4293040420","https://openalex.org/W2289294330","https://openalex.org/W3133222449","https://openalex.org/W2210738511","https://openalex.org/W2474302342"],"abstract_inverted_index":{"Discovering":[0,205],"and":[1,34,46,78,143,180,197,206],"exploring":[2,207],"the":[3,7,21,50,101,111,117,154,200,208,212],"hidden":[4,209],"diversity":[5,210],"of":[6,40,53,110,125,133,136,157,169,211],"human":[8,22,213],"gut":[9,214],"viruses":[10,215],"using":[11,216],"highly":[12,217],"enriched":[13,26,218],"virome":[14,219],"samples":[15,220],"Viruses":[16],"are":[17,61,70],"crucially":[18],"important":[19],"in":[20,100,105,116,199],"microbiome.":[23],"By":[24],"leveraging":[25],"Viral-Like":[27],"Particle":[28],"(VLP)":[29],"viromes,":[30],"through":[31],"metagenomic":[32],"assembly":[33],"sequence":[35],"clustering,":[36],"we":[37,58],"retrieved":[38],"thousands":[39],"viral":[41,56,138],"contigs":[42,152,162],"by":[43],"from":[44,141,153,163],"viromes":[45,164],"metagenomes.This":[47],"upload":[48],"contains":[49],"public":[51],"collection":[52],">":[54],"162,000":[55],"sequnces":[57],"retrieved.":[59],"Sequences":[60],"clustered":[62],"into":[63,81],"3,944":[64],"VSCs":[65],"(Viral":[66],"Sequence":[67,84],"Clusters)":[68],"that":[69],"labelled":[71],"as":[72],"known":[73],"(kVSCs)":[74],"or":[75],"unknown":[76],"(uVSCs),":[77],"further":[79],"grouped":[80],"1,345":[82],"Viral":[83],"Groups":[85],"(VSGs).":[86],"Files":[87],"File":[88],"Description":[89],"VSC5_rep_fnas_nr99_45k_metaphlanDB.fna.gz":[90],"The":[91,122,130,167],"45,872":[92,112],"representative":[93,113,127],"sequences":[94,114,135],"(dereplicated":[95],"at":[96],"99%":[97],"identity),":[98],"included":[99,115],"MetaPhlan":[102,118],"4.1":[103,119],"module,":[104],"FASTA":[106],"format.":[107],"VSCs_groups.csv":[108],"Metadata":[109],"module.":[120],"VSC5_rep_fnas_full_47k.fna.gz":[121],"non-dereplicated":[123],"set":[124,132],"47,820":[126],"sequences.":[128],"VSC5_complete_162k_labelled.fna.gz":[129],"complete":[131],"162,876":[134],"potential":[137],"origin":[139],"extracted":[140],"metagenomes":[142,156],"viromes:":[144],"5651":[145],"Highly":[146],"Enriched":[147],"Virome":[148],"Contigs":[149],"(HEVC)":[150],"126,894":[151],"unbinned":[155],"Pasolli":[158],"et":[159],"al.":[160],"30,331":[161],"CRISPR_VSG-to-species.csv":[165],"CRISPR_VSG-to-SGBs.csv":[166],"host-associations":[168],"each":[170],"VSG":[171],"group":[172],"(each":[173],"line":[174],"is":[175],"a":[176,186],"match":[177],"between":[178],"VSG-species":[179],"VSG-SGB).":[181],"VSC_profiling_examples.zip":[182],"An":[183],"archive":[184],"containing":[185],"test":[187],"/":[188],"tutorial":[189],"subsampled":[190],"dataset.":[191],"Supplementary":[192,195],"Data":[193],"See":[194],"Figures":[196],"Tables":[198],"original":[201],"biorxiv":[202],"publication.":[203],"Citation":[204],"-":[221],"bioRxiv":[222],"2024":[223],"Moreno":[224],"Zolfo,":[225],"Andrea":[226],"Silverj,":[227],"Aitor":[228],"Blanco-M\u00edguez,":[229],"Paolo":[230],"Manghi,":[231],"Omar":[232],"Rota-Stabelli,":[233],"Vitor":[234],"Heidrich,":[235],"Jordan":[236],"Jensen,":[237],"Sagun":[238],"Maharjan,":[239],"Eric":[240],"Franzosa,":[241],"Cristina":[242],"Menni,":[243],"Alessia":[244],"Visconti,":[245],"Federica":[246],"Pinto,":[247],"Matteo":[248],"Ciciani,":[249],"Curtis":[250],"Huttenhower,":[251],"Anna":[252],"Cereseto,":[253],"Francesco":[254],"Asnicar,":[255],"Hiroaki":[256],"Kitano,":[257],"Takuji":[258],"Yamada,":[259],"Nicola":[260],"Segata.":[261]},"counts_by_year":[],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
