{"id":"https://openalex.org/W4393744634","doi":"https://doi.org/10.5281/zenodo.10283103","title":"tBiomed: Semantic Table Annotations Benchmark for Biomedical Domain","display_name":"tBiomed: Semantic Table Annotations Benchmark for Biomedical Domain","publication_year":2023,"publication_date":"2023-12-07","ids":{"openalex":"https://openalex.org/W4393744634","doi":"https://doi.org/10.5281/zenodo.10283103"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10283103","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10283103","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10283103","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077590238","display_name":"Nora Abdelmageed","orcid":"https://orcid.org/0000-0002-1405-6860"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Abdelmageed, Nora","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1405-6860","affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056324053","display_name":"Ernesto Jim\u00e9nez-Ruiz","orcid":"https://orcid.org/0000-0002-9083-4599"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jim\u00e8nez-Ruiz, Ernesto","raw_affiliation_strings":["City, University of London, UK"],"raw_orcid":"https://orcid.org/0000-0002-9083-4599","affiliations":[{"raw_affiliation_string":"City, University of London, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068065546","display_name":"Oktie Hassanzadeh","orcid":"https://orcid.org/0000-0001-5307-9857"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hassanzadeh, Oktie","raw_affiliation_strings":["IBM Research, USA"],"raw_orcid":"https://orcid.org/0000-0001-5307-9857","affiliations":[{"raw_affiliation_string":"IBM Research, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K\u00f6nig-Ries, Birgitta","raw_affiliation_strings":["Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2382-9722","affiliations":[{"raw_affiliation_string":"Heinz Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University Jena, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077590238"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9182000160217285,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7089337110519409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6490380764007568},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.6203209161758423},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5261718034744263},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45196208357810974},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43649888038635254},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39114630222320557},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.19902780652046204},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17696422338485718},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.1295672059059143},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.11705118417739868}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7089337110519409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6490380764007568},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.6203209161758423},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5261718034744263},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45196208357810974},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43649888038635254},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39114630222320557},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.19902780652046204},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17696422338485718},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.1295672059059143},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.11705118417739868},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10283103","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10283103","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10283103","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10283103","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W2087343574","https://openalex.org/W4246352526","https://openalex.org/W2121910908"],"abstract_inverted_index":{"tBiomed":[0,63,80],"is":[1,12,64,120],"a":[2,36,47,58,72,92,175,232],"dataset":[3,119],"for":[4,14,159],"tabular":[5],"data":[6,54,98,112,140],"to":[7,171,189,203,231],"knowledge":[8,60,222],"graph":[9,61],"matching.":[10],"It":[11],"derived":[13],"the":[15,25,41,96,102,105,129,133,142,153,168,178,192,206,214,220,228],"Biodiversity":[16],"domain":[17],"and":[18,84],"has":[19],"two":[20,69],"types":[21],"of":[22,38,71,75,95,101,104,117],"tables.":[23],"On":[24,40],"one":[26],"hand,":[27,43],"Horizontal":[28],"Relational":[29],"Tables":[30,45],"are":[31,150],"where":[32],"each":[33],"table":[34,161,170,187,201],"represents":[35],"collection":[37],"entities.":[39],"other":[42],"Entity":[44,182],"represent":[46],"single":[48],"entity.":[49],"We":[50,123],"supported":[51,157],"ground":[52,110,138],"truth":[53,111,139],"from":[55,177,191,205,219],"Wikidata":[56],"as":[57],"target":[59,179,193,207,221],"(KG).":[62],"generated":[65],"by":[66],"KG2Tables":[67],"using":[68],"levels":[70],"recursive":[73],"hierarchy":[74],"related":[76],"concepts":[77],"in":[78,141,146,152],"Wikidata.":[79],"contains":[81,90],"26,778":[82],"entity":[83,173,234],"horizontal":[85],"tables,":[86],"while":[87],"this":[88,118,126],"repository":[89,127],"only":[91],"validation":[93],"fold":[94,135],"original":[97],"representing":[99],"20%":[100],"total":[103],"entire":[106,169,229],"benchmark":[107],"with":[108,128,136],"its":[109,137],"(gt).":[113],"The":[114,156],"Full":[115],"size":[116],"1":[121],"GB.":[122],"will":[124],"update":[125],"full":[130,154],"dataset,":[131,155],"including":[132],"test":[134],"Future.":[143],"Please":[144],"get":[145],"touch":[147],"if":[148],"you":[149],"interested":[151],"tasks":[158],"semantic":[160],"annotations":[162],"are:":[163],"Topic":[164],"Detection":[165],"(TD)":[166],"links":[167,199],"an":[172],"or":[174,235],"class":[176],"KG.":[180,194,208],"Cell":[181],"Annotation":[183,197,211,225],"(CEA)":[184],"maps":[185],"individual":[186,200],"cells":[188],"entities":[190],"Column":[195,209],"Type":[196],"(CTA)":[198],"columns":[202],"classes":[204],"Property":[210],"(CPA)":[212],"detects":[213],"relations":[215],"between":[216],"column":[217],"pairs":[218],"graph.":[223],"Row":[224],"(RA)":[226],"annotates":[227],"row":[230],"KG":[233],"property.":[236]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}