{"id":"https://openalex.org/W4393566329","doi":"https://doi.org/10.5281/zenodo.10245052","title":"SiteMap pockets for the PDBbind dataset","display_name":"SiteMap pockets for the PDBbind dataset","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4393566329","doi":"https://doi.org/10.5281/zenodo.10245052"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10245052","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10245052","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10245052","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077005193","display_name":"Gianluca Palermo","orcid":"https://orcid.org/0000-0001-7955-8012"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"PALERMO, GIANLUCA","raw_affiliation_strings":["Politecnico di Milano"],"affiliations":[{"raw_affiliation_string":"Politecnico di Milano","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084534227","display_name":"Giovanni Bocchi","orcid":"https://orcid.org/0000-0002-4017-8212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bocchi, Giovanni","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045022480","display_name":"Carmine Talarico","orcid":"https://orcid.org/0000-0003-4789-0955"},"institutions":[{"id":"https://openalex.org/I4210140932","display_name":"Domp\u00e9 (Italy)","ror":"https://ror.org/04erezm33","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210140932"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Talarico, Carmine","raw_affiliation_strings":["Domp\u00e9 farmaceutici SpA"],"affiliations":[{"raw_affiliation_string":"Domp\u00e9 farmaceutici SpA","institution_ids":["https://openalex.org/I4210140932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059293847","display_name":"Davide Gadioli","orcid":"https://orcid.org/0000-0002-0143-0737"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"GADIOLI, DAVIDE","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5004734394","display_name":"Alessandro Pedretti","orcid":"https://orcid.org/0000-0001-5916-2029"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"PEDRETTI, ALESSANDRO","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077005193"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.4147999882698059,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.4147999882698059,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.3896999955177307,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3940829932689667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3940829932689667}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10245052","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10245052","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10245052","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10245052","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"This":[0],"dataset":[1],"includes":[2],"the":[3,9,14,19,26],"protein":[4],"pockets":[5],"identified":[6],"by":[7,25],"using":[8],"SITEMAP":[10],"approach":[11],"[SITEMAP]":[12,35],"for":[13,40],"PDBbind":[15],"v.2020":[16],"dataset.":[17],"Only":[18],"proteins":[20],"that":[21],"were":[22],"automatically":[23],"processed":[24],"tool,":[27],"without":[28],"generating":[29],"any":[30],"error,":[31],"are":[32],"included":[33],"here.":[34],"T.":[36],"Halgren,":[37],"\"New":[38],"Method":[39],"Fast":[41],"and":[42,47],"Accurate":[43],"Binding-":[44],"site":[45],"Identification":[46],"Analysis,\"":[48],"Chemical":[49],"Biology":[50],"&":[51],"Drug":[52],"Design,":[53],"vol.":[54],"69,":[55],"no.":[56],"2,":[57],"pp.":[58],"146\u2013148,":[59],"Feb.":[60],"2007,":[61],"doi:":[62],"10.1111/j.1747-0285.2007.00483.x.":[63]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}