{"id":"https://openalex.org/W4393563893","doi":"https://doi.org/10.5281/zenodo.10159290","title":"SPIDER - Lumbar spine segmentation in MR images: a dataset and a public benchmark","display_name":"SPIDER - Lumbar spine segmentation in MR images: a dataset and a public benchmark","publication_year":2023,"publication_date":"2023-11-20","ids":{"openalex":"https://openalex.org/W4393563893","doi":"https://doi.org/10.5281/zenodo.10159290"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.10159290","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10159290","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.10159290","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049191610","display_name":"Jasper W. van der Graaf","orcid":"https://orcid.org/0000-0001-8684-5175"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jasper Willem van der Graaf","raw_affiliation_strings":["Radboudumc"],"raw_orcid":"https://orcid.org/0000-0001-8684-5175","affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023653685","display_name":"Miranda L. van Hooff","orcid":"https://orcid.org/0000-0001-5313-6436"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Miranda L. van Hooff","raw_affiliation_strings":["Radboudumc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048648840","display_name":"Constantinus F. M. Buckens","orcid":"https://orcid.org/0000-0002-3190-258X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Constantinus F. M. Buckens","raw_affiliation_strings":["Radboudumc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036815525","display_name":"Matthieu Rutten","orcid":"https://orcid.org/0000-0001-8651-6646"},"institutions":[{"id":"https://openalex.org/I4210160169","display_name":"Jeroen Bosch Ziekenhuis","ror":"https://ror.org/04rr42t68","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210160169"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Matthieu Rutten","raw_affiliation_strings":["Jeroen Bosch Hospital"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jeroen Bosch Hospital","institution_ids":["https://openalex.org/I4210160169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083737256","display_name":"Job L. C. van Susante","orcid":"https://orcid.org/0000-0001-7440-3089"},"institutions":[{"id":"https://openalex.org/I4210152306","display_name":"Rijnstate Hospital","ror":"https://ror.org/0561z8p38","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210152306"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Job L. C. van Susante","raw_affiliation_strings":["Rijnstate Hospital"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rijnstate Hospital","institution_ids":["https://openalex.org/I4210152306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040679110","display_name":"Robert Jan Kroeze","orcid":"https://orcid.org/0000-0002-0752-9519"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Jan Kroeze","raw_affiliation_strings":["Sint Maartenskliniek"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sint Maartenskliniek","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000383976","display_name":"Marinus de Kleuver","orcid":"https://orcid.org/0000-0002-3506-1212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marinus de Kleuver","raw_affiliation_strings":["Radboudumc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042982766","display_name":"Bram van Ginneken","orcid":"https://orcid.org/0000-0003-2028-8972"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bram van Ginneken","raw_affiliation_strings":["Radboudumc"],"raw_orcid":"https://orcid.org/0000-0003-2028-8972","affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043459900","display_name":"Nikolas Le\u00dfmann","orcid":"https://orcid.org/0000-0001-7935-9611"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nikolas Lessmann","raw_affiliation_strings":["Radboudumc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Radboudumc","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10238","display_name":"Spine and Intervertebral Disc Pathology","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7569491267204285},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6640655994415283},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6061612963676453},{"id":"https://openalex.org/keywords/lumbar-spine","display_name":"Lumbar spine","score":0.5315271019935608},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49638015031814575},{"id":"https://openalex.org/keywords/lumbar","display_name":"Lumbar","score":0.4460422396659851},{"id":"https://openalex.org/keywords/spine","display_name":"SPINE (molecular biology)","score":0.4338172674179077},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.38338786363601685},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.3118476867675781},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.2761497497558594},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26292428374290466},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.23761653900146484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10630831122398376},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.05239102244377136},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.04917287826538086}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7569491267204285},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6640655994415283},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6061612963676453},{"id":"https://openalex.org/C3017433307","wikidata":"https://www.wikidata.org/wiki/Q405478","display_name":"Lumbar spine","level":2,"score":0.5315271019935608},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49638015031814575},{"id":"https://openalex.org/C44575665","wikidata":"https://www.wikidata.org/wiki/Q1293405","display_name":"Lumbar","level":2,"score":0.4460422396659851},{"id":"https://openalex.org/C205383261","wikidata":"https://www.wikidata.org/wiki/Q7392570","display_name":"SPINE (molecular biology)","level":2,"score":0.4338172674179077},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.38338786363601685},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.3118476867675781},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.2761497497558594},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26292428374290466},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.23761653900146484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10630831122398376},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.05239102244377136},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.04917287826538086}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5281/zenodo.10159290","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10159290","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.10159290","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.10159290","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2469513573","https://openalex.org/W4313351382","https://openalex.org/W1727574226","https://openalex.org/W2312647758","https://openalex.org/W2487483786","https://openalex.org/W2333631314","https://openalex.org/W2030513486","https://openalex.org/W940969563","https://openalex.org/W4254914027"],"abstract_inverted_index":{"This":[0,118,219],"is":[1,57],"a":[2,42,142,163],"large":[3],"publicly":[4],"available":[5,64],"multi-center":[6],"lumbar":[7,97],"spine":[8,88,98],"magnetic":[9],"resonance":[10],"imaging":[11],"(MRI)":[12],"dataset":[13,26,155,248],"with":[14,41,158,249],"reference":[15],"segmentations":[16],"of":[17,38,44,87,96,144],"vertebrae,":[18],"intervertebral":[19],"discs":[20],"(IVDs),":[21],"and":[22,31,82,90,108,128,146,181,221,253],"spinal":[23],"canal.":[24],"The":[25,48,154,232],"includes":[27,141],"447":[28],"sagittal":[29],"T1":[30],"T2":[32],"MRI":[33,101,152],"series":[34],"from":[35,52],"218":[36,39],"studies":[37,102],"patients":[40,127,133],"history":[43],"low":[45],"back":[46],"pain.":[47],"data":[49,77],"was":[50,137],"collected":[51],"four":[53],"different":[54],"hospitals.":[55],"There":[56],"an":[58],"additional":[59],"hidden":[60],"test":[61],"set,":[62],"not":[63],"here,":[65],"used":[66],"in":[67,84,114,162,228],"the":[68,85,93,106,115,122,129,132,167,222,250,256],"accompanying":[69],"SPIDER":[70],"challenge":[71,235],"on":[72],"spider.grand-challenge.org.":[73],"We":[74],"share":[75],"this":[76,136,229,243,247],"to":[78,105,209],"encourage":[79],"wider":[80],"participation":[81],"collaboration":[83],"field":[86],"segmentation,":[89],"ultimately":[91],"improve":[92],"diagnostic":[94],"value":[95],"MRI.":[99],"Which":[100],"are":[103,214,226],"assigned":[104],"training":[107],"validation":[109],"sets":[110],"can":[111,236],"be":[112,237],"found":[113,161,238],"overview":[116],"file.":[117],"file":[119,165],"also":[120,140,156,254],"provides":[121],"biological":[123],"sex":[124],"for":[125,131,134,149,166],"all":[126],"age":[130],"which":[135],"available.":[138],"It":[139],"number":[143],"scanner":[145],"acquisition":[147],"parameters":[148],"each":[150],"individual":[151],"study.":[153],"comes":[157],"radiological":[159,212],"gradings":[160,213],"separate":[164],"following":[168],"degenerative":[169],"changes:":[170],"1.":[171],"Modic":[172],"changes":[173,184],"(type":[174],"I,":[175],"II":[176],"or":[177],"III)":[178],"2.":[179],"Upper":[180],"lower":[182],"endplate":[183],"/":[185],"Schmorl":[186],"nodes":[187],"(binary)":[188,191,195,199,203],"3.":[189],"Spondylolisthesis":[190],"4.":[192],"Disc":[193,197,201],"herniation":[194],"5.":[196],"narrowing":[198],"6.":[200],"bulging":[202],"7.":[204],"Pfirrman":[205],"grade":[206],"(grade":[207],"1":[208],"5).":[210],"All":[211],"provided":[215],"per":[216],"IVD":[217],"level.":[218],"dataset,":[220,244],"associated":[223],"public":[224,233],"benchmark,":[225],"described":[227],"paper:":[230],"https://www.nature.com/articles/s41597-024-03090-w":[231],"segmenation":[234],"here:":[239],"https://spider.grand-challenge.org/":[240],"When":[241],"using":[242],"please":[245],"cite":[246,255],"correct":[251],"DOI,":[252],"afformentioned":[257],"paper.":[258]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
