{"id":"https://openalex.org/W3185766610","doi":"https://doi.org/10.5220/0010521801920199","title":"Biomedical Dataset Recommendation","display_name":"Biomedical Dataset Recommendation","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3185766610","doi":"https://doi.org/10.5220/0010521801920199","mag":"3185766610"},"language":"en","primary_location":{"id":"doi:10.5220/0010521801920199","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010521801920199","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th International Conference on Data Science, Technology and Applications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0010521801920199","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000048946","display_name":"Xu Wang","orcid":"https://orcid.org/0000-0002-7585-759X"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Xu Wang","raw_affiliation_strings":["Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029130731","display_name":"Frank van Harmelen","orcid":"https://orcid.org/0000-0002-7913-0048"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Frank van Harmelen","raw_affiliation_strings":["Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101447313","display_name":"Zhisheng Huang","orcid":"https://orcid.org/0000-0003-3794-9829"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Zhisheng Huang","raw_affiliation_strings":["Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Vrije University Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands, --- Select a Country ---","institution_ids":["https://openalex.org/I865915315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000048946"],"corresponding_institution_ids":["https://openalex.org/I865915315"],"apc_list":null,"apc_paid":null,"fwci":0.3218,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55756347,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"192","last_page":"199"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9677000045776367,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8498297929763794},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.704278290271759},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6317514181137085},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6104802489280701},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5562908053398132},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5127328634262085},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43617990612983704},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.43611425161361694},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4277178943157196},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36353856325149536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8498297929763794},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.704278290271759},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6317514181137085},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6104802489280701},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5562908053398132},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5127328634262085},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43617990612983704},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.43611425161361694},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4277178943157196},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36353856325149536},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5220/0010521801920199","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010521801920199","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th International Conference on Data Science, Technology and Applications","raw_type":"proceedings-article"},{"id":"pmh:vu:oai:research.vu.nl:publications/02b44fba-78d3-4a80-aa35-fb79ff84b6fc","is_oa":false,"landing_page_url":"https://research.vu.nl/en/publications/02b44fba-78d3-4a80-aa35-fb79ff84b6fc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 10th International Conference on Data Science, Technology and Applications, 192 - 199","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":{"id":"doi:10.5220/0010521801920199","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010521801920199","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 10th International Conference on Data Science, Technology and Applications","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175"],"abstract_inverted_index":{"Dataset":[0],"search":[1,22,56,68],"is":[2,149],"a":[3,58,62,80,85,150],"special":[4],"application":[5],"of":[6,36,135,154,171,181],"information":[7],"retrieval,":[8],"which":[9,26],"aims":[10],"to":[11,39,49,89,159],"help":[12],"scientists":[13],"with":[14,104],"finding":[15],"the":[16,29,34,37,41,65,67,101,109,133,155,169,172,182],"datasets":[17,138],"they":[18],"want.":[19],"Current":[20],"dataset":[21,55,63,76,95,147],"engines":[23],"are":[24,31,166],"query-driven,":[25],"implies":[27],"that":[28,132],"results":[30,130],"limited":[32],"by":[33,53,64,168],"ability":[35],"user":[38],"formulate":[40],"appropriate":[42],"query.":[43],"In":[44],"this":[45,51,75,94,163],"paper":[46],"we":[47],"aim":[48],"solve":[50,74],"limitation":[52],"framing":[54],"as":[57,142],"recommendation":[59,77,96,102],"task:":[60],"given":[61],"user,":[66],"engine":[69],"recommends":[70],"similar":[71],"datasets.":[72],"We":[73,83,98,112],"task":[78,88,103,134],"using":[79],"similarity":[81,106,116],"approach.":[82],"provide":[84],"simple":[86],"benchmark":[87,113],"evaluate":[90,100],"different":[91,115],"approaches":[92,107,183],"for":[93],"task.":[97,152],"also":[99],"several":[105],"in":[108,145],"biomedical":[110],"domain.":[111],"8":[114],"metrics":[117],"between":[118],"datasets,":[119],"including":[120],"both":[121],"ontology-based":[122,156],"techniques":[123,125],"and":[124,165,187],"from":[126],"machine":[127],"learning.":[128],"Our":[129],"show":[131],"recommending":[136],"scientific":[137],"based":[139],"on":[140,162],"meta-data":[141],"it":[143],"occurs":[144],"realistic":[146],"collections":[148],"hard":[151],"None":[153],"methods":[157,178],"manage":[158],"perform":[160],"well":[161],"task,":[164],"outscored":[167],"majority":[170],"machine-learning":[173],"methods.":[174],"Of":[175],"these":[176],"ML":[177],"only":[179,190],"one":[180],"performs":[184],"reasonably":[185],"well,":[186],"even":[188],"then":[189],"reaches":[191],"70%":[192],"accuracy.":[193]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
