{"id":"https://openalex.org/W4407930026","doi":"https://doi.org/10.5220/0013157300003911","title":"Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity","display_name":"Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4407930026","doi":"https://doi.org/10.5220/0013157300003911"},"language":"en","primary_location":{"id":"doi:10.5220/0013157300003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013157300003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0013157300003911","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036608392","display_name":"Michael Fatemi","orcid":null},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Michael Fatemi","raw_affiliation_strings":["University of Virginia, Charlottesville, Virginia, U.S.A"],"affiliations":[{"raw_affiliation_string":"University of Virginia, Charlottesville, Virginia, U.S.A","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017439671","display_name":"Yunrui Lu","orcid":"https://orcid.org/0000-0003-1089-9323"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yunrui Lu","raw_affiliation_strings":["Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073926694","display_name":"Zarif Azher","orcid":"https://orcid.org/0000-0003-1604-692X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zarif Azher","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066134412","display_name":"Cyril Sharma","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cyril Sharma","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004926572","display_name":"Eric Feng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric Feng","raw_affiliation_strings":["Thomas Jefferson High School for Science and Technology, Alexandria, VA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Thomas Jefferson High School for Science and Technology, Alexandria, VA, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022033375","display_name":"Alos Diallo","orcid":"https://orcid.org/0000-0002-6471-4630"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alos Diallo","raw_affiliation_strings":["Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072382821","display_name":"Gokul Raghavendra Srinivasan","orcid":"https://orcid.org/0000-0002-9836-4851"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gokul Srinivasan","raw_affiliation_strings":["Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093036605","display_name":"Grace M. Rosner","orcid":"https://orcid.org/0009-0000-4625-4098"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grace Rosner","raw_affiliation_strings":["Department of Medicine, Section of Radiology Oncology, Dartmouth Health, Lebanon, NH, U.S.A","Department of Molecular and Cell Biology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Section of Radiology Oncology, Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular and Cell Biology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003800857","display_name":"Kelli B. Pointer","orcid":"https://orcid.org/0000-0001-9383-0000"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kelli Pointer","raw_affiliation_strings":["Department of Medicine, Section of Radiology Oncology, Dartmouth Health, Lebanon, NH, U.S.A","Department of Molecular and Cell Biology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Section of Radiology Oncology, Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular and Cell Biology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081393377","display_name":"Brock C. Christensen","orcid":"https://orcid.org/0000-0003-3022-426X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brock Christensen","raw_affiliation_strings":["Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082545896","display_name":"Lucas A. Salas","orcid":"https://orcid.org/0000-0002-2279-4097"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lucas Salas","raw_affiliation_strings":["Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001250550","display_name":"Gregory J. Tsongalis","orcid":"https://orcid.org/0000-0002-0792-3196"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gregory Tsongalis","raw_affiliation_strings":["Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013283010","display_name":"Scott Palisoul","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Scott Palisoul","raw_affiliation_strings":["Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083964091","display_name":"Laurent Perreard","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laurent Perreard","raw_affiliation_strings":["Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, N.H, U.S.A"],"affiliations":[{"raw_affiliation_string":"Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, N.H, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065035721","display_name":"Fred Kolling","orcid":"https://orcid.org/0000-0002-6178-9901"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fred Kolling IV","raw_affiliation_strings":["Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, N.H, U.S.A"],"affiliations":[{"raw_affiliation_string":"Genomics Shared Resource, Dartmouth Cancer Center, Lebanon, N.H, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075327685","display_name":"Louis Vaickus","orcid":"https://orcid.org/0000-0002-8989-9539"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Louis Vaickus","raw_affiliation_strings":["Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053202754","display_name":"Joshua Levy","orcid":"https://orcid.org/0000-0001-8050-1291"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joshua Levy","raw_affiliation_strings":["Department of Computational Biomedicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","Department of Dermatology, Dartmouth Health, Lebanon, N.H, U.S.A","Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biomedicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Department of Dermatology, Dartmouth Health, Lebanon, N.H, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Cedars Sinai Medical Center, Los Angeles, CA, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Emerging Diagnostic and Investigative Technologies, Department of Pathology and Laboratory Medicine,  Dartmouth Health, Lebanon, NH, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Program in Quantitative Biomedical Sciences, Dartmouth College Geisel School of Medicine, Hanover, NH, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5036608392"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":null,"apc_paid":null,"fwci":2.5866,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.86402121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"444","last_page":"458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.941100001335144,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12317","display_name":"Actinomycetales infections and treatment","score":0.9391000270843506,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.624874472618103},{"id":"https://openalex.org/keywords/tumor-heterogeneity","display_name":"Tumor heterogeneity","score":0.5554797053337097},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5023083686828613},{"id":"https://openalex.org/keywords/spatial-heterogeneity","display_name":"Spatial heterogeneity","score":0.5007193088531494},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.49913501739501953},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4556058943271637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3351859152317047},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3201811909675598},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.27589496970176697},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2101280391216278},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14220324158668518},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13836252689361572},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11277899146080017},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10988008975982666}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.624874472618103},{"id":"https://openalex.org/C3018028425","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumor heterogeneity","level":3,"score":0.5554797053337097},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5023083686828613},{"id":"https://openalex.org/C180478619","wikidata":"https://www.wikidata.org/wiki/Q7574066","display_name":"Spatial heterogeneity","level":2,"score":0.5007193088531494},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.49913501739501953},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4556058943271637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3351859152317047},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3201811909675598},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.27589496970176697},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2101280391216278},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14220324158668518},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13836252689361572},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11277899146080017},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10988008975982666}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5220/0013157300003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013157300003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.5220/0013157300003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013157300003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W4287439916","https://openalex.org/W4393095904","https://openalex.org/W3115686316"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-12-28T23:10:05.387466","created_date":"2025-10-10T00:00:00"}
