{"id":"https://openalex.org/W4407930186","doi":"https://doi.org/10.5220/0013102600003911","title":"Modeling HIF-ILK Interaction Using Continuous Petri Nets","display_name":"Modeling HIF-ILK Interaction Using Continuous Petri Nets","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4407930186","doi":"https://doi.org/10.5220/0013102600003911"},"language":"en","primary_location":{"id":"doi:10.5220/0013102600003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102600003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0013102600003911","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116417920","display_name":"Viktor Gilin","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Viktor Gilin","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116417921","display_name":"Sanne Laauwen","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sanne Laauwen","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuying Xia","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Yuying Xia","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116417922","display_name":"Noria Yousufi","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Noria Yousufi","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100393055","display_name":"Lu Cao","orcid":"https://orcid.org/0000-0002-1847-068X"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lu Cao","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04242424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"537","last_page":"544"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.819599986076355,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.819599986076355,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8163667917251587},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7264620065689087},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.4208257496356964},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.385622501373291}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8163667917251587},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7264620065689087},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.4208257496356964},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.385622501373291}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5220/0013102600003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102600003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2503.07451","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2503.07451","pdf_url":"https://arxiv.org/pdf/2503.07451","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.5220/0013102600003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102600003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1543378523","https://openalex.org/W2916743419","https://openalex.org/W2381491984","https://openalex.org/W2257573499","https://openalex.org/W1847176793","https://openalex.org/W1980200158","https://openalex.org/W2091203523","https://openalex.org/W1513546254","https://openalex.org/W2125164140","https://openalex.org/W2148229336"],"abstract_inverted_index":{"Oxygen":[0],"concentration":[1],"in":[2],"tumor":[3],"micro-environment":[4],"is":[5,37],"a":[6,81,92,128,133,147],"well-established":[7],"signal":[8],"that":[9],"can":[10],"induce":[11],"aggressive":[12],"cancer":[13,140],"behaviour.":[14],"In":[15],"particular,":[16],"low":[17],"oxygen":[18,111],"levels":[19],"(hypoxia)":[20],"activate":[21],"the":[22,59,66,86,96,110,115],"Hypoxia-Inducible":[23],"Factor(HIF)":[24],"pathway":[25,98],"which":[26,42],"has":[27],"an":[28,72],"array":[29],"of":[30,34,114],"target":[31],"systems.":[32],"One":[33],"these":[35,62],"systems":[36],"Integrin-Linked":[38],"Kinase":[39],"(ILK)":[40],"pathway,":[41],"influences":[43],"key":[44],"signaling":[45],"pathways":[46],"for":[47,131,149],"cell":[48],"survival,":[49],"proliferation,":[50],"and":[51,119,142],"migration.":[52],"Hence,":[53],"this":[54,125],"paper":[55],"aimed":[56],"to":[57,79,90,99],"explore":[58],"interconnection":[60],"between":[61],"two":[63],"pathways.":[64],"Using":[65],"Petri":[67,83],"net":[68],"modeling":[69],"tool":[70],"Snoopy,":[71],"established":[73],"HIF":[74,117],"network":[75,87],"model":[76,108,118,126],"was":[77,88],"transformed":[78],"be":[80],"continuous":[82],"net.":[84],"Subsequently,":[85],"expanded":[89],"incorporate":[91],"feedback":[93],"element":[94],"from":[95],"ILK":[97],"HIF,":[100],"based":[101],"on":[102,138],"gene":[103],"expression":[104],"data.":[105],"The":[106],"resulting":[107],"conserved":[109],"switch":[112],"response":[113],"original":[116],"positively":[120],"amplified":[121],"HIF's":[122],"output.":[123],"Therefore,":[124],"provides":[127],"starting":[129],"point":[130],"establishing":[132],"system":[134],"reflecting":[135],"crucial":[136],"effect":[137],"hypoxia-induced":[139],"behavior,":[141],"could":[143],"potentially":[144],"serve":[145],"as":[146],"basis":[148],"future":[150],"drug":[151],"development.":[152]},"counts_by_year":[],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
