{"id":"https://openalex.org/W4407930549","doi":"https://doi.org/10.5220/0013102400003911","title":"Petri Net Modeling of Root Hair Response to Phosphate Starvation in Arabidopsis Thaliana","display_name":"Petri Net Modeling of Root Hair Response to Phosphate Starvation in Arabidopsis Thaliana","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4407930549","doi":"https://doi.org/10.5220/0013102400003911"},"language":"en","primary_location":{"id":"doi:10.5220/0013102400003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102400003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0013102400003911","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116418070","display_name":"Amber Fijn","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Amber Fijn","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116418071","display_name":"Casper Stiekema","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Casper Stiekema","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116418072","display_name":"Stijn Boere","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Stijn Boere","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116418073","display_name":"Marijan Vi\u0161i\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marijan Vi\u0161i\u0107","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100393055","display_name":"Lu Cao","orcid":"https://orcid.org/0000-0002-1847-068X"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lu Cao","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Einsteinweg 55, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":null,"apc_paid":null,"fwci":3.2105,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.86108626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"529","last_page":"536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.8337574005126953},{"id":"https://openalex.org/keywords/root-hair","display_name":"Root hair","score":0.824783444404602},{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.592739999294281},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.5666621923446655},{"id":"https://openalex.org/keywords/starvation","display_name":"Starvation","score":0.522954523563385},{"id":"https://openalex.org/keywords/net","display_name":"Net (polyhedron)","score":0.44880157709121704},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3699134886264801},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36530500650405884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30205222964286804},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2135884165763855},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1698962152004242},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10561314225196838},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.07512950897216797},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0659380555152893}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.8337574005126953},{"id":"https://openalex.org/C53161047","wikidata":"https://www.wikidata.org/wiki/Q1351263","display_name":"Root hair","level":3,"score":0.824783444404602},{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.592739999294281},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.5666621923446655},{"id":"https://openalex.org/C2780606744","wikidata":"https://www.wikidata.org/wiki/Q853930","display_name":"Starvation","level":2,"score":0.522954523563385},{"id":"https://openalex.org/C14166107","wikidata":"https://www.wikidata.org/wiki/Q253829","display_name":"Net (polyhedron)","level":2,"score":0.44880157709121704},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3699134886264801},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36530500650405884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30205222964286804},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2135884165763855},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1698962152004242},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10561314225196838},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.07512950897216797},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0659380555152893},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5220/0013102400003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102400003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2503.07477","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2503.07477","pdf_url":"https://arxiv.org/pdf/2503.07477","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.5220/0013102400003911","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0013102400003911","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.7900000214576721}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2169772275","https://openalex.org/W2376860923","https://openalex.org/W2072824610","https://openalex.org/W2001769235","https://openalex.org/W2372176003","https://openalex.org/W2375411279","https://openalex.org/W2025279042","https://openalex.org/W3206602460","https://openalex.org/W1981568115","https://openalex.org/W3004385929"],"abstract_inverted_index":{"Limited":[0],"availability":[1],"of":[2,23,40,54],"inorganic":[3],"phosphate":[4,31],"(Pi)":[5],"in":[6,33,70,76,118,128,146,155],"soil":[7],"is":[8,81],"an":[9,141],"important":[10,142],"constraint":[11],"to":[12,17,26,30,56,66,95,165],"plant":[13,24],"growth.":[14],"In":[15,149],"order":[16],"understand":[18],"better":[19],"the":[20,28,77,82,99,110,116,125,135,138,150,152,156,169],"underlying":[21],"mechanism":[22],"response":[25,29],"Pi,":[27],"starvation":[32],"Arabidopsis":[34],"thaliana":[35,50],"was":[36,64,105],"investigated":[37],"through":[38],"use":[39],"Petri":[41,103],"Nets,":[42],"a":[43,52,163],"formal":[44],"language":[45],"suitable":[46],"for":[47,115,144],"bio-modeling.":[48],"A.":[49],"displays":[51],"range":[53],"responses":[55],"deal":[57],"with":[58],"Pi":[59,100],"starvation,":[60],"but":[61],"special":[62],"attention":[63],"paid":[65],"root":[67,78,119,129],"hair":[68,79,120,130],"elongation":[69],"this":[71],"study.":[72],"A":[73,102],"central":[74],"player":[75],"pathway":[80],"transcription":[83],"factor":[84],"ROOT":[85],"HAIR":[86],"DEFECTIVE":[87],"6-LIKE":[88],"4":[89],"(RSL4),":[90],"which":[91,107],"has":[92],"been":[93],"found":[94],"be":[96,160],"upregulated":[97],"during":[98],"stress.":[101],"Net":[104],"created":[106],"could":[108,159],"simulate":[109],"gene":[111],"regulatory":[112],"networks":[113],"responsible":[114],"increase":[117,127],"length,":[121],"as":[122,124,162],"well":[123],"resulting":[126],"length.":[131],"Notably,":[132],"discrepancies":[133],"between":[134,171],"model":[136],"and":[137,173],"literature":[139],"suggested":[140],"role":[143],"RSL2":[145,172],"regulating":[147],"RSL4.":[148,174],"future,":[151],"net":[153],"designed":[154],"current":[157],"study":[158],"used":[161],"platform":[164],"develop":[166],"hypotheses":[167],"about":[168],"interaction":[170]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
