{"id":"https://openalex.org/W4214561382","doi":"https://doi.org/10.5220/0010884500003123","title":"DeIDNER Model: A Neural Network Named Entity Recognition Model for Use in the De-identification of Clinical Notes","display_name":"DeIDNER Model: A Neural Network Named Entity Recognition Model for Use in the De-identification of Clinical Notes","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4214561382","doi":"https://doi.org/10.5220/0010884500003123","pmid":"https://pubmed.ncbi.nlm.nih.gov/35386186"},"language":"en","primary_location":{"id":"doi:10.5220/0010884500003123","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010884500003123","pdf_url":null,"source":{"id":"https://openalex.org/S4363608833","display_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.5220/0010884500003123","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056325946","display_name":"Mahanazuddin Syed","orcid":"https://orcid.org/0000-0002-8978-1565"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahanazuddin Syed","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080922402","display_name":"Kevin W. Sexton","orcid":"https://orcid.org/0000-0002-1460-9867"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Sexton","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024988228","display_name":"Melody Greer","orcid":"https://orcid.org/0000-0002-1070-5907"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melody Greer","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078319091","display_name":"Shorabuddin Syed","orcid":"https://orcid.org/0000-0002-4761-5972"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shorabuddin Syed","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007578546","display_name":"Joseph VanScoy","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph VanScoy","raw_affiliation_strings":["College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001645797","display_name":"Farhan Kawsar","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farhan Kawsar","raw_affiliation_strings":["College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044595058","display_name":"Evan Olson","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erica Olson","raw_affiliation_strings":["College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064144268","display_name":"Karan Patel","orcid":"https://orcid.org/0000-0001-6084-4748"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karan Patel","raw_affiliation_strings":["College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042321983","display_name":"Jake Erwin","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jake Erwin","raw_affiliation_strings":["College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061744695","display_name":"Sudeepa Bhattacharyya","orcid":"https://orcid.org/0000-0003-3493-6029"},"institutions":[{"id":"https://openalex.org/I125956826","display_name":"Arkansas State University","ror":"https://ror.org/006pyvd89","country_code":"US","type":"education","lineage":["https://openalex.org/I125956826"]},{"id":"https://openalex.org/I4210152116","display_name":"Arkansas Biosciences Institute","ror":"https://ror.org/04ptmx344","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210152116"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sudeepa Bhattacharyya","raw_affiliation_strings":["Department of Biological Sciences and Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences and Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I4210152116","https://openalex.org/I125956826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046980164","display_name":"Meredith Zozus","orcid":"https://orcid.org/0000-0002-9332-1684"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meredith Zozus","raw_affiliation_strings":["Department of Population Health Sciences, University of Texas Health Science Center at San Antonio, San Antonio, TX, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Population Health Sciences, University of Texas Health Science Center at San Antonio, San Antonio, TX, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063662396","display_name":"Fred Prior","orcid":"https://orcid.org/0000-0002-6314-5683"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fred Prior","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, U.S.A., --- Select a Country ---","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6228,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6586801,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"5","issue":null,"first_page":"640","last_page":"647"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.8554463386535645},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8266937732696533},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7378093004226685},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7187590599060059},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7075102925300598},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6445797681808472},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.6437845230102539},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.614733099937439},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.5817312598228455},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5623656511306763},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5475793480873108},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5001552104949951},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4994373321533203},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4862576723098755},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.46859660744667053},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4547904431819916},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.44995078444480896},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4115796685218811}],"concepts":[{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.8554463386535645},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8266937732696533},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7378093004226685},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7187590599060059},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7075102925300598},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6445797681808472},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.6437845230102539},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.614733099937439},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.5817312598228455},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5623656511306763},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5475793480873108},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5001552104949951},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4994373321533203},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4862576723098755},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.46859660744667053},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4547904431819916},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.44995078444480896},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4115796685218811},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.5220/0010884500003123","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010884500003123","pdf_url":null,"source":{"id":"https://openalex.org/S4363608833","display_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},{"id":"pmid:35386186","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35386186","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8981408","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8981408","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biomed Eng Syst Technol Int Jt Conf BIOSTEC Revis Sel Pap","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.5220/0010884500003123","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0010884500003123","pdf_url":null,"source":{"id":"https://openalex.org/S4363608833","display_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G8454924503","display_name":null,"funder_award_id":"UL1 TR003107","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1995228216","https://openalex.org/W2167277498","https://openalex.org/W2190333735","https://openalex.org/W2729101176","https://openalex.org/W2734608416","https://openalex.org/W2736280136","https://openalex.org/W2787045460","https://openalex.org/W2905373823","https://openalex.org/W2933436187","https://openalex.org/W2944851425","https://openalex.org/W2980839612","https://openalex.org/W2982424689","https://openalex.org/W2993873509","https://openalex.org/W3092142868","https://openalex.org/W3098474649","https://openalex.org/W3135446575","https://openalex.org/W3164761369"],"related_works":["https://openalex.org/W2787045460","https://openalex.org/W1803059841","https://openalex.org/W2078793151","https://openalex.org/W3004047707","https://openalex.org/W2939048927","https://openalex.org/W3136915866","https://openalex.org/W3080906831","https://openalex.org/W2887872604","https://openalex.org/W3089044186","https://openalex.org/W4281971828"],"abstract_inverted_index":{"Clinical":[0],"named":[1],"entity":[2],"recognition":[3,221],"(NER)":[4],"is":[5,62],"an":[6,114,139,180,186,210],"essential":[7],"building":[8],"block":[9],"for":[10],"many":[11],"downstream":[12,225],"natural":[13],"language":[14],"processing":[15],"(NLP)":[16],"applications":[17],"such":[18],"as":[19,147],"information":[20],"extraction":[21],"and":[22,48,82,88,94,108,138,159,179],"de-identification.":[23],"Recently,":[24],"deep":[25],"learning":[26],"(DL)":[27],"methods":[28],"that":[29,78,118,217],"utilize":[30],"word":[31,51,123,126,130,145],"embeddings":[32,52,81,90,216],"have":[33],"become":[34],"popular":[35],"in":[36,69],"clinical":[37,70,95,228],"NLP":[38],"tasks.":[39],"However,":[40],"there":[41],"has":[42],"been":[43],"little":[44],"work":[45],"on":[46,173,185,203],"evaluating":[47],"combining":[49,214],"the":[50,65,84,92,196,204,220,224],"trained":[53],"from":[54,91],"different":[55,80,120,215],"domains.":[56,96],"The":[57,165],"goal":[58],"of":[59,67,86,183,213,227],"this":[60],"study":[61,208],"to":[63,201],"improve":[64,219],"performance":[66,172,222],"NER":[68,111],"discharge":[71,106],"summaries":[72,107],"by":[73,153],"developing":[74],"a":[75,128,133],"DL":[76],"model":[77,112,167],"combines":[79,119],"investigate":[83],"combination":[85],"standard":[87,122],"contextual":[89,194],"general":[93],"We":[97],"developed:":[98],"1)":[99],"A":[100,110],"human-annotated":[101],"high-quality":[102],"internal":[103,187,205],"corpus":[104],"with":[105,113,144],"2)":[109],"input":[115],"embedding":[116,131],"layer":[117],"embeddings:":[121],"embeddings,":[124,127,195],"context-based":[125],"character-level":[129],"using":[132],"convolutional":[134],"neural":[135],"network":[136],"(CNN),":[137],"external":[140],"knowledge":[141],"sources":[142],"along":[143],"features":[146],"one-hot":[148],"vectors.":[149],"Embedding":[150],"was":[151],"followed":[152],"bidirectional":[154],"long":[155],"short-term":[156],"memory":[157],"(Bi-LSTM)":[158],"conditional":[160],"random":[161],"field":[162],"(CRF)":[163],"layers.":[164],"proposed":[166],"reaches":[168],"or":[169],"overcomes":[170],"state-of-the-art":[171],"two":[174],"publicly":[175],"available":[176],"data":[177],"sets":[178],"F1":[181,197],"score":[182,198],"94.31%":[184],"corpus.":[188,206],"After":[189],"incorporating":[190],"mixed-domain":[191],"clinically":[192],"pre-trained":[193],"further":[199],"improved":[200],"95.36%":[202],"This":[207],"demonstrated":[209],"efficient":[211],"way":[212],"will":[218],"aiding":[223],"de-identification":[226],"notes.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
