{"id":"https://openalex.org/W3010018398","doi":"https://doi.org/10.5220/0008949700460053","title":"Automated 3D Labelling of Fibroblasts and Endothelial Cells in SEM-Imaged Placenta using Deep Learning","display_name":"Automated 3D Labelling of Fibroblasts and Endothelial Cells in SEM-Imaged Placenta using Deep Learning","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3010018398","doi":"https://doi.org/10.5220/0008949700460053","mag":"3010018398"},"language":"en","primary_location":{"id":"doi:10.5220/0008949700460053","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008949700460053","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0008949700460053","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016209195","display_name":"Benita MacKay","orcid":"https://orcid.org/0000-0003-2050-8912"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Benita Mackay","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086220782","display_name":"Sophie Blundell","orcid":"https://orcid.org/0000-0003-4379-9601"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sophie Blundell","raw_affiliation_strings":["Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016655141","display_name":"Olivia Etter","orcid":null},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Olivia Etter","raw_affiliation_strings":["Faculty of Medicine, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000953647","display_name":"Yunhui Xie","orcid":"https://orcid.org/0000-0002-8841-7235"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yunhui Xie","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018621401","display_name":"Michael McDonnel","orcid":null},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael McDonnel","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055964296","display_name":"Matthew Praeger","orcid":"https://orcid.org/0000-0002-5814-6155"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Praeger","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072408376","display_name":"James A. Grant\u2010Jacob","orcid":"https://orcid.org/0000-0002-4270-4247"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Grant-Jacob","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080337562","display_name":"R.W. Eason","orcid":"https://orcid.org/0000-0001-9704-2204"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Eason","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083838863","display_name":"Rohan M. Lewis","orcid":"https://orcid.org/0000-0003-4044-9104"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rohan Lewis","raw_affiliation_strings":["Faculty of Medicine, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081631274","display_name":"Ben Mills","orcid":"https://orcid.org/0000-0002-1784-1012"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ben Mills","raw_affiliation_strings":["Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Optoelectronics Research Centre, University of Southampton, Southampton, U.K., --- Select a Country ---","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5016209195"],"corresponding_institution_ids":["https://openalex.org/I43439940"],"apc_list":null,"apc_paid":null,"fwci":0.5302,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71497021,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"46","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10290","display_name":"Pregnancy and preeclampsia studies","score":0.9513000249862671,"subfield":{"id":"https://openalex.org/subfields/2729","display_name":"Obstetrics and Gynecology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9297999739646912,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/labelling","display_name":"Labelling","score":0.6849631071090698},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6057058572769165},{"id":"https://openalex.org/keywords/placenta","display_name":"Placenta","score":0.5942447781562805},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5907397866249084},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5562538504600525},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5530206561088562},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.541210412979126},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5075548887252808},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4773183763027191},{"id":"https://openalex.org/keywords/fibroblast","display_name":"Fibroblast","score":0.47397297620773315},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.4694152772426605},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.44102683663368225},{"id":"https://openalex.org/keywords/face","display_name":"Face (sociological concept)","score":0.4119487702846527},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40658628940582275},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.38863661885261536},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3602644205093384},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28526774048805237},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2202366292476654},{"id":"https://openalex.org/keywords/cell-culture","display_name":"Cell culture","score":0.20802101492881775},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14301985502243042},{"id":"https://openalex.org/keywords/pregnancy","display_name":"Pregnancy","score":0.10330304503440857},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0943586528301239}],"concepts":[{"id":"https://openalex.org/C2780523633","wikidata":"https://www.wikidata.org/wiki/Q380709","display_name":"Labelling","level":2,"score":0.6849631071090698},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6057058572769165},{"id":"https://openalex.org/C2776953305","wikidata":"https://www.wikidata.org/wiki/Q1212935","display_name":"Placenta","level":4,"score":0.5942447781562805},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5907397866249084},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5562538504600525},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5530206561088562},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.541210412979126},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5075548887252808},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4773183763027191},{"id":"https://openalex.org/C2780381497","wikidata":"https://www.wikidata.org/wiki/Q463418","display_name":"Fibroblast","level":3,"score":0.47397297620773315},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.4694152772426605},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.44102683663368225},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.4119487702846527},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40658628940582275},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.38863661885261536},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3602644205093384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28526774048805237},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2202366292476654},{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.20802101492881775},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14301985502243042},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.10330304503440857},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0943586528301239},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C172680121","wikidata":"https://www.wikidata.org/wiki/Q26513","display_name":"Fetus","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5220/0008949700460053","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008949700460053","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.soton.ac.uk:436579","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference or Workshop Item"}],"best_oa_location":{"id":"doi:10.5220/0008949700460053","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008949700460053","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth"}],"awards":[{"id":"https://openalex.org/G2387687998","display_name":null,"funder_award_id":"EP/N03368X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6650134701","display_name":null,"funder_award_id":"EP/T026197/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1545149781","https://openalex.org/W1901129140","https://openalex.org/W2014586311","https://openalex.org/W2031190995","https://openalex.org/W2038665424","https://openalex.org/W2110687752","https://openalex.org/W2123150738","https://openalex.org/W2563706360","https://openalex.org/W2777077293","https://openalex.org/W2972705295","https://openalex.org/W4300912893"],"related_works":["https://openalex.org/W1525479493","https://openalex.org/W1976633635","https://openalex.org/W2396436470","https://openalex.org/W1970064489","https://openalex.org/W4241622628","https://openalex.org/W1991894391","https://openalex.org/W2070829827","https://openalex.org/W2078502149","https://openalex.org/W2022106528","https://openalex.org/W2380886523"],"abstract_inverted_index":{"Analysis":[0],"of":[1,24,35,55],"fibroblasts":[2,25],"within":[3],"placenta":[4],"is":[5,80],"necessary":[6],"for":[7,71],"research":[8],"into":[9],"placental":[10,94],"growth-factors,":[11],"which":[12],"are":[13,48],"linked":[14],"to":[15,30,52,66,82],"lifelong":[16],"health":[17],"and":[18,33],"chronic":[19],"disease":[20],"risk.":[21],"2D":[22],"analysis":[23],"can":[26,40,63],"be":[27,64],"challenging":[28],"due":[29],"the":[31,45,56,68],"variation":[32],"complexity":[34],"their":[36],"structure.":[37],"3D":[38,73],"imaging":[39],"provide":[41],"important":[42],"visualisation,":[43],"but":[44],"images":[46],"produced":[47],"extremely":[49],"labour":[50],"intensive":[51],"construct":[53],"because":[54],"extensive":[57],"manual":[58],"processing":[59],"required.":[60],"Machine":[61],"learning":[62],"used":[65],"automate":[67],"labelling":[69],"process":[70],"faster":[72],"analysis.":[74],"Here,":[75],"a":[76,84],"deep":[77],"neural":[78],"network":[79],"trained":[81],"label":[83],"fibroblast":[85],"from":[86],"serial":[87],"block":[88],"face":[89],"scanning":[90],"electron":[91],"microscopy":[92],"(SBFSEM)":[93],"imaging.":[95]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
