{"id":"https://openalex.org/W2979105035","doi":"https://doi.org/10.5220/0008167101640173","title":"Biochemistry Procedure-oriented Ontology: A Case Study","display_name":"Biochemistry Procedure-oriented Ontology: A Case Study","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2979105035","doi":"https://doi.org/10.5220/0008167101640173","mag":"2979105035"},"language":"en","primary_location":{"id":"doi:10.5220/0008167101640173","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008167101640173","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0008167101640173","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060958866","display_name":"Mohammed Alliheedi","orcid":"https://orcid.org/0000-0002-8434-3048"},"institutions":[{"id":"https://openalex.org/I52207611","display_name":"Al Baha University","ror":"https://ror.org/0403jak37","country_code":"SA","type":"education","lineage":["https://openalex.org/I52207611"]},{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA","SA"],"is_corresponding":true,"raw_author_name":"Mohammed Alliheedi","raw_affiliation_strings":["Department of Computer Science, Al Baha University, Prince Mohammad Bin Saud, Al Bahah 65527, Saudi Arabia, David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario and Canada, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Al Baha University, Prince Mohammad Bin Saud, Al Bahah 65527, Saudi Arabia, David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario and Canada, --- Select a Country ---","institution_ids":["https://openalex.org/I151746483","https://openalex.org/I52207611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017726184","display_name":"Yetian Wang","orcid":"https://orcid.org/0000-0002-6984-7256"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yetian Wang","raw_affiliation_strings":["David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario and Canada, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario and Canada, --- Select a Country ---","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056001196","display_name":"Robert E. Mercer","orcid":"https://orcid.org/0000-0002-0080-715X"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]},{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert Mercer","raw_affiliation_strings":["David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario, Canada, Department of Computer Science, The University of Western Ontario, 1151 Richmond St., London, Ontario and Canada, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"David Cheriton School of Computer Science, University of Waterloo, 200 University Ave., Waterloo, Ontario, Canada, Department of Computer Science, The University of Western Ontario, 1151 Richmond St., London, Ontario and Canada, --- Select a Country ---","institution_ids":["https://openalex.org/I151746483","https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060958866"],"corresponding_institution_ids":["https://openalex.org/I151746483","https://openalex.org/I52207611"],"apc_list":null,"apc_paid":null,"fwci":0.14,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5747373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"164","last_page":"173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9624000191688538,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.657036542892456},{"id":"https://openalex.org/keywords/decidability","display_name":"Decidability","score":0.6554290652275085},{"id":"https://openalex.org/keywords/cardinality","display_name":"Cardinality (data modeling)","score":0.6525915265083313},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6084668040275574},{"id":"https://openalex.org/keywords/completeness","display_name":"Completeness (order theory)","score":0.5771372318267822},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4793756306171417},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.42566490173339844},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.4253583550453186},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.41152098774909973},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37642812728881836},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3228398859500885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25267064571380615},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24262037873268127},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18219080567359924}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.657036542892456},{"id":"https://openalex.org/C153269930","wikidata":"https://www.wikidata.org/wiki/Q430001","display_name":"Decidability","level":2,"score":0.6554290652275085},{"id":"https://openalex.org/C87117476","wikidata":"https://www.wikidata.org/wiki/Q362383","display_name":"Cardinality (data modeling)","level":2,"score":0.6525915265083313},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6084668040275574},{"id":"https://openalex.org/C17231256","wikidata":"https://www.wikidata.org/wiki/Q5156540","display_name":"Completeness (order theory)","level":2,"score":0.5771372318267822},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4793756306171417},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.42566490173339844},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.4253583550453186},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.41152098774909973},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37642812728881836},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3228398859500885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25267064571380615},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24262037873268127},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18219080567359924},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5220/0008167101640173","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008167101640173","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.5220/0008167101640173","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0008167101640173","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2972379433","https://openalex.org/W2331020993","https://openalex.org/W4383764068","https://openalex.org/W1481826604","https://openalex.org/W1797057780","https://openalex.org/W3187762542","https://openalex.org/W2583753471","https://openalex.org/W2583549044","https://openalex.org/W2989332944","https://openalex.org/W1971653407"],"abstract_inverted_index":{"Ontologies":[0],"must":[1],"provide":[2],"the":[3,10,22],"entities,":[4],"concepts,":[5],"and":[6,50,73,84,128],"relations":[7],"required":[8],"by":[9,97],"domain":[11,15],"being":[12,29],"represented.":[13],"The":[14,26],"of":[16,56,68,117,130],"interest":[17],"in":[18,102,109],"this":[19,110],"paper":[20],"is":[21,31,113,126],"biochemistry":[23,124],"experimental":[24],"procedure.":[25],"ontology":[27],"language":[28],"used":[30,88],"OWL-DL.":[32],"OWL-DL":[33],"was":[34],"adopted":[35],"due":[36],"to":[37,89,105],"its":[38],"well-balanced":[39],"flexibility":[40],"among":[41],"expressiveness":[42],"(e.g.,":[43],"class":[44],"description,":[45],"cardinality":[46],"restriction,":[47],"etc.),":[48],"completeness,":[49],"decidability.":[51],"These":[52],"procedures":[53],"are":[54,66,87,133],"composed":[55,67],"procedure":[57],"steps":[58],"which":[59,112],"can":[60,77,94],"be":[61,78,95],"represented":[62,79],"as":[63,107],"sequences.":[64,91],"Sequences":[65],"totally":[69],"ordered,":[70,72],"partially":[71],"alternative":[74],"subsequences.":[75],"Subsequences":[76],"with":[80],"two":[81],"relations,":[82],"directlyFollows":[83],"directlyPrecedes":[85],"that":[86],"represent":[90],"Alternative":[92],"subsequences":[93,132],"generated":[96],"composing":[98],"a":[99,114,123],"oneOf":[100],"function":[101],"OWL-DL,":[103],"referred":[104],"it":[106],"optionalStepOf":[108],"work,":[111],"simple":[115],"generalization":[116],"exclusiveOR.":[118],"Alkaline":[119],"Agarose":[120],"Gel":[121],"Electrophoresis,":[122],"procedure,":[125],"described":[127],"examples":[129],"these":[131],"provided.":[134]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
