{"id":"https://openalex.org/W2967600042","doi":"https://doi.org/10.5220/0007836703590370","title":"Genetic Algorithm to Detect Different Sizes\u2019 Communities from Protein-Protein Interaction Networks","display_name":"Genetic Algorithm to Detect Different Sizes\u2019 Communities from Protein-Protein Interaction Networks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2967600042","doi":"https://doi.org/10.5220/0007836703590370","mag":"2967600042"},"language":"en","primary_location":{"id":"doi:10.5220/0007836703590370","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0007836703590370","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 14th International Conference on Software Technologies","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0007836703590370","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060385045","display_name":"Marwa Ben M\u2019barek","orcid":"https://orcid.org/0000-0002-8307-3533"},"institutions":[{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["FR","TN"],"is_corresponding":true,"raw_author_name":"Marwa Ben M\u2019Barek","raw_affiliation_strings":["LIPAH, Facult\u00e9 des Sciences de Tunis, Universit\u00e9 de Tunis El Manar2092, Tunis, Tunisia, LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"LIPAH, Facult\u00e9 des Sciences de Tunis, Universit\u00e9 de Tunis El Manar2092, Tunis, Tunisia, LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---","institution_ids":["https://openalex.org/I56435720","https://openalex.org/I108714496","https://openalex.org/I2746051580","https://openalex.org/I63596082","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030719563","display_name":"Amel Borgi","orcid":"https://orcid.org/0000-0003-4225-4677"},"institutions":[{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]},{"id":"https://openalex.org/I63596082","display_name":"Tunis El Manar University","ror":"https://ror.org/029cgt552","country_code":"TN","type":"education","lineage":["https://openalex.org/I63596082"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Amel Borgi","raw_affiliation_strings":["LIPAH, Facult\u00e9 des Sciences de Tunis, Universit\u00e9 de Tunis El Manar2092, Tunis, Tunisia, Institut Sup\u00e9rieur d'Informatique, Universit\u00e9 de Tunis El Manar, 1002, Tunis and Tunisia, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"LIPAH, Facult\u00e9 des Sciences de Tunis, Universit\u00e9 de Tunis El Manar2092, Tunis, Tunisia, Institut Sup\u00e9rieur d'Informatique, Universit\u00e9 de Tunis El Manar, 1002, Tunis and Tunisia, --- Select a Country ---","institution_ids":["https://openalex.org/I108714496","https://openalex.org/I63596082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049372818","display_name":"Sana Ben Hamida","orcid":"https://orcid.org/0000-0003-4202-613X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sana Ben Hmida","raw_affiliation_strings":["LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---","institution_ids":["https://openalex.org/I56435720","https://openalex.org/I2746051580","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007645900","display_name":"Marta Rukoz","orcid":"https://orcid.org/0009-0002-2941-9625"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I56435720","display_name":"Universit\u00e9 Paris Dauphine-PSL","ror":"https://ror.org/052bz7812","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580","https://openalex.org/I56435720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marta Rukoz","raw_affiliation_strings":["LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---"],"affiliations":[{"raw_affiliation_string":"LAMSADE CNRS UMR 7243, Paris Dauphine University, PSL Research University, Place du Mar\u00e9chal de Lattre de Tassigny, Paris and France, --- Select a Country ---","institution_ids":["https://openalex.org/I56435720","https://openalex.org/I2746051580","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060385045"],"corresponding_institution_ids":["https://openalex.org/I108714496","https://openalex.org/I1294671590","https://openalex.org/I2746051580","https://openalex.org/I56435720","https://openalex.org/I63596082"],"apc_list":null,"apc_paid":null,"fwci":0.2577,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56561915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"359","last_page":"370"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.958899974822998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6468092799186707},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.567251980304718},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5378214120864868},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5294703245162964},{"id":"https://openalex.org/keywords/fitness-function","display_name":"Fitness function","score":0.5130223631858826},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4862419664859772},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46565133333206177},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4612520933151245},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44765931367874146},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4274422228336334},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36902791261672974},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.33906400203704834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32672905921936035},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.3096204996109009},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3002704977989197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2716468274593353},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24774044752120972}],"concepts":[{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6468092799186707},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.567251980304718},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5378214120864868},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5294703245162964},{"id":"https://openalex.org/C176066374","wikidata":"https://www.wikidata.org/wiki/Q629118","display_name":"Fitness function","level":3,"score":0.5130223631858826},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4862419664859772},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46565133333206177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4612520933151245},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44765931367874146},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4274422228336334},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36902791261672974},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.33906400203704834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32672905921936035},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.3096204996109009},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3002704977989197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2716468274593353},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24774044752120972},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.5220/0007836703590370","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0007836703590370","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 14th International Conference on Software Technologies","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-02286178v1","is_oa":true,"landing_page_url":"https://hal.parisnanterre.fr/hal-02286178","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"14th International Conference on Software Technologies, Jul 2019, Prague, Czech Republic. pp.359-370, &#x27E8;10.5220/0007836703590370&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:HAL:hal-02482236v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02482236","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"14th International Conference on Software Technologies","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:basepub.dauphine.fr:123456789/20037","is_oa":true,"landing_page_url":"https://basepub.dauphine.fr/handle/123456789/20037","pdf_url":null,"source":{"id":"https://openalex.org/S4306401007","display_name":"Base Institutionnelle de Recherche de l'universit\u00e9 Paris-Dauphine (BIRD) (University Paris-Dauphine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102197404","host_organization_name":"Universit\u00e9 Paris-Sud","host_organization_lineage":["https://openalex.org/I102197404"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Communication / Conf\u00e9rence"}],"best_oa_location":{"id":"doi:10.5220/0007836703590370","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0007836703590370","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 14th International Conference on Software Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1497990247","https://openalex.org/W1539854304","https://openalex.org/W1568834902","https://openalex.org/W1659833910","https://openalex.org/W1668065109","https://openalex.org/W1781719596","https://openalex.org/W1969271108","https://openalex.org/W1971421925","https://openalex.org/W2010502047","https://openalex.org/W2028133290","https://openalex.org/W2084168100","https://openalex.org/W2087739686","https://openalex.org/W2095293504","https://openalex.org/W2100935296","https://openalex.org/W2106391842","https://openalex.org/W2127536416","https://openalex.org/W2128049108","https://openalex.org/W2134695923","https://openalex.org/W2136480620","https://openalex.org/W2145506897","https://openalex.org/W2153636826","https://openalex.org/W2159482845","https://openalex.org/W2161271012","https://openalex.org/W2556598943","https://openalex.org/W2743429087","https://openalex.org/W2889211893","https://openalex.org/W3023540311","https://openalex.org/W3126033509","https://openalex.org/W4298161285"],"related_works":["https://openalex.org/W2094822546","https://openalex.org/W4388708026","https://openalex.org/W1969080446","https://openalex.org/W3108941781","https://openalex.org/W1578069856","https://openalex.org/W2134206588","https://openalex.org/W2084200259","https://openalex.org/W2154613611","https://openalex.org/W2586268529","https://openalex.org/W2125650596"],"abstract_inverted_index":{"The":[0,63],"community":[1,120],"detection":[2,30],"in":[3,10,28,33,134],"large":[4],"networks":[5,42],"is":[6,65],"an":[7],"important":[8],"problem":[9],"many":[11],"scientific":[12],"fields":[13],"ranging":[14],"from":[15,70,90,150],"Biology":[16],"to":[17,50,66,84,143],"Sociology":[18],"and":[19,105,121],"Computer":[20],"Science.":[21],"In":[22,128],"this":[23,93,135],"paper,":[24],"we":[25,95],"are":[26,126],"interested":[27],"the":[29,34,60,106,129,137],"of":[31,53],"communities":[32,69,86,149],"Protein-protein":[35,151],"or":[36,45,55,111,146,152],"Gene-gene":[37,153],"Interaction":[38,154],"(PPI)":[39],"networks.":[40,155],"These":[41],"represent":[43],"protein-protein":[44],"gene-gene":[46],"interactions":[47],"which":[48],"corresponds":[49],"a":[51,79,97,102,114,119,122],"set":[52],"proteins":[54,110],"genes":[56],"that":[57],"collaborate":[58],"at":[59],"same":[61],"cellularfunction.":[62],"goal":[64],"identify":[67],"such":[68,74],"gene":[71],"annotation":[72],"sources":[73],"as":[75],"Gene":[76],"Ontology.":[77],"Wepropose":[78],"Genetic":[80],"Algorithm":[81],"based":[82,100],"approach":[83],"detect":[85,144],"having":[87],"different":[88],"sizes":[89],"PPI":[91],"networks.For":[92],"purpose,":[94],"use":[96],"fitness":[98],"function":[99],"on":[101],"similarity":[103],"measure":[104],"interaction":[107],"value":[108],"between":[109],"genes.":[112],"Moreover,":[113],"specific":[115,123],"solution":[116],"for":[117],"representing":[118],"mutation":[124],"operator":[125],"introduced.":[127],"computational":[130],"tests":[131],"carried":[132],"out":[133],"work,":[136],"introduced":[138],"algorithm":[139],"achieved":[140],"excellent":[141],"results":[142],"existing":[145],"even":[147],"new":[148]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2019-08-22T00:00:00"}
