{"id":"https://openalex.org/W2344436788","doi":"https://doi.org/10.5220/0005700300510062","title":"BioMed Xplorer - Exploring (Bio)Medical Knowledge using Linked Data","display_name":"BioMed Xplorer - Exploring (Bio)Medical Knowledge using Linked Data","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2344436788","doi":"https://doi.org/10.5220/0005700300510062","mag":"2344436788"},"language":"en","primary_location":{"id":"doi:10.5220/0005700300510062","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005700300510062","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0005700300510062","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018554171","display_name":"Mohammad Shafahi","orcid":"https://orcid.org/0000-0002-3532-668X"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Mohammad Shafahi","raw_affiliation_strings":["University of Amsterdam, Netherlands","Singel 425, 1012 WP Amsterdam, The Netherlands","Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Singel 425, 1012 WP Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016080166","display_name":"Hayo Bart","orcid":null},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hayo Bart","raw_affiliation_strings":["University of Amsterdam, Netherlands","Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands","Singel 425, 1012 WP Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Singel 425, 1012 WP Amsterdam, The Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000991072","display_name":"Hamideh Afsarmanesh","orcid":"https://orcid.org/0000-0001-5402-2000"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hamideh Afsarmanesh","raw_affiliation_strings":["University of Amsterdam, Netherlands","Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands","Singel 425, 1012 WP Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Informatics Institute, Faculty of Science, University of Amsterdam, Science Park 904, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Singel 425, 1012 WP Amsterdam, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018554171"],"corresponding_institution_ids":["https://openalex.org/I887064364"],"apc_list":null,"apc_paid":null,"fwci":0.5222,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71179191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"51","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5662680268287659},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3880111575126648},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36222928762435913}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5662680268287659},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3880111575126648},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36222928762435913}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.5220/0005700300510062","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005700300510062","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},{"id":"pmh:oai:dare.uva.nl:openaire/8e7661e5-af8f-4657-b28c-f15064ea70b1","is_oa":false,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/biomed-xplorer(8e7661e5-af8f-4657-b28c-f15064ea70b1).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Shafahi, M, Bart, H & Afsarmanesh, H 2016, BioMed Xplorer : Exploring (bio)medical knowledge using linked data. in J Gilbert, H Azhari, H Ali, C Quint\u00e3o, J Sliwa, C Ruiz, A Fred & H Gamboa (eds), BIOSTEC 2016 : proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies : Rome, Italy, 21-23 February, 2016. - Volume 3: Bioinformatics. Set\u00fabal, pp. 51-62, 9th International Joint Conference on Biomedical Engineering Systems and Technologies, Rome, Italy, 21/02/16. https://doi.org/10.5220/0005700300510062","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/8e7661e5-af8f-4657-b28c-f15064ea70b1","is_oa":true,"landing_page_url":"http://hdl.handle.net/11245.1/8e7661e5-af8f-4657-b28c-f15064ea70b1","pdf_url":"https://pure.uva.nl/ws/files/31462486/57003.pdf","source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Shafahi, M, Bart, H & Afsarmanesh, H 2016, BioMed Xplorer : Exploring (bio)medical knowledge using linked data. in J Gilbert, H Azhari, H Ali, C Quint\u00e3o, J Sliwa, C Ruiz, A Fred & H Gamboa (eds), BIOSTEC 2016 : proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies : Rome, Italy, 21-23 February, 2016. - Volume 3: Bioinformatics. Set\u00fabal, pp. 51-62, 9th International Joint Conference on Biomedical Engineering Systems and Technologies, Rome, Italy, 21/02/16. https://doi.org/10.5220/0005700300510062","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/8e7661e5-af8f-4657-b28c-f15064ea70b1","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/biomed-xplorer(8e7661e5-af8f-4657-b28c-f15064ea70b1).html","pdf_url":"https://dare.uva.nl/personal/pure/en/publications/biomed-xplorer(8e7661e5-af8f-4657-b28c-f15064ea70b1).html","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BIOSTEC 2016 : proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies: Rome, Italy, 21-23 February, 2016. - Volume 3: Bioinformatics, 51 - 62","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":{"id":"doi:10.5220/0005700300510062","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005700300510062","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5099999904632568,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1513938829","https://openalex.org/W1542026696","https://openalex.org/W1575523541","https://openalex.org/W1577783107","https://openalex.org/W1976316416","https://openalex.org/W2015191210","https://openalex.org/W2042651385","https://openalex.org/W2070812389","https://openalex.org/W2103017472","https://openalex.org/W2107577705","https://openalex.org/W2117446654","https://openalex.org/W2120736575","https://openalex.org/W2146194201","https://openalex.org/W2159335058","https://openalex.org/W2162965868","https://openalex.org/W2163040665","https://openalex.org/W2165428180","https://openalex.org/W2168905447","https://openalex.org/W2188661153","https://openalex.org/W2971629451","https://openalex.org/W4237164635","https://openalex.org/W4312932207","https://openalex.org/W4361853931","https://openalex.org/W4384914609","https://openalex.org/W4385270883"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Developing":[0],"an":[1,132],"effective":[2],"model":[3,93,119],"for":[4,94],"predicting":[5],"risks":[6],"of":[7,12,16,23,26,43,49,71,90,101,152,198],"a":[8,13,41,67,76,91,99,118,121,136,150,165,174],"disease":[9],"requires":[10],"exploration":[11],"vast":[14],"body":[15,25],"(bio)medical":[17,95,103],"knowledge.":[18],"Furthermore,":[19,142],"the":[20,57,84,88,196,199],"continuous":[21],"growth":[22],"this":[24,110,112,163],"knowledge":[27,167],"poses":[28],"extra":[29],"challenges.":[30],"Numerous":[31],"research":[32,80],"has":[33,169],"attempted":[34],"to":[35,82,126],"address":[36,56,83],"these":[37,50],"issues":[38],"through":[39,87,135],"developing":[40],"variety":[42],"approaches":[44],"and":[45,65,105,120,139,157,186,192],"support":[46],"tools.":[47],"Most":[48],"tools":[51],"however,":[52],"do":[53],"not":[54],"sufficiently":[55],"needed":[58],"dynamism,":[59],"lack":[60],"intuitiveness":[61],"in":[62,131],"their":[63,159],"use,":[64],"present":[66],"rather":[68],"scarce":[69],"amount":[70],"information":[72,133,148],"usually":[73],"obtained":[74],"from":[75,149],"single":[77],"source.":[78],"This":[79],"aims":[81],"aforementioned":[85],"gaps":[86],"development":[89],"dynamic":[92],"knowledge,":[96,129],"represented":[97],"as":[98],"network":[100],"interrelated":[102],"concepts,":[104],"integrating":[106],"disperse":[107],"sources.":[108],"To":[109],"end,":[111],"paper":[113],"introduces":[114],"BioMed":[115,143],"Xplorer,":[116],"presenting":[117,158],"tool":[122],"that":[123],"enables":[124],"researchers":[125],"explore":[127],"biomedical":[128],"organized":[130],"graph,":[134],"user":[137],"friendly":[138],"intuitive":[140],"interface.":[141],"Xplorer":[144],"provides":[145],"concept":[146],"related":[147],"multitude":[151],"sources,":[153],"while":[154],"also":[155],"preserving":[156],"provenance":[160],"data.":[161],"For":[162],"purpose":[164],"RDF":[166],"base":[168],"been":[170],"created":[171],"based":[172],"on":[173],"core":[175],"ontology":[176],"which":[177],"we":[178],"have":[179],"introduced.":[180],"Results":[181],"are":[182,193],"further":[183],"experimented":[184],"with":[185],"validated":[187],"by":[188],"some":[189],"domain":[190],"experts":[191],"contrasted":[194],"against":[195],"state":[197],"art.":[200]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
