{"id":"https://openalex.org/W2344267920","doi":"https://doi.org/10.5220/0005668401980206","title":"PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing","display_name":"PAPAyA: A Highly Scalable Cloud-based Framework for Genomic Processing","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2344267920","doi":"https://doi.org/10.5220/0005668401980206","mag":"2344267920"},"language":"en","primary_location":{"id":"doi:10.5220/0005668401980206","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005668401980206","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0005668401980206","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030710937","display_name":"Fran\u00e7ois Andry","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francois Andry","raw_affiliation_strings":["Philips, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, United States","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017119312","display_name":"Nevenka Dimitrova","orcid":"https://orcid.org/0000-0003-4091-9233"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nevenka Dimitrova","raw_affiliation_strings":["Philips, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, United States","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089340154","display_name":"Alexander Mankovich","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Mankovich","raw_affiliation_strings":["Philips, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, United States","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085649942","display_name":"Vartika Agrawal","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vartika Agrawal","raw_affiliation_strings":["Philips, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, United States","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040613078","display_name":"Anas Bder","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124922","display_name":"Philips (Israel)","ror":"https://ror.org/03cb8f280","country_code":"IL","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210124922"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Anas Bder","raw_affiliation_strings":["Philips, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, Israel","institution_ids":["https://openalex.org/I4210124922"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024427802","display_name":"Ariel David","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124922","display_name":"Philips (Israel)","ror":"https://ror.org/03cb8f280","country_code":"IL","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210124922"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ariel David","raw_affiliation_strings":["Philips, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips, Israel","institution_ids":["https://openalex.org/I4210124922"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5764,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6682185,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"198","last_page":"206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8534458875656128},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7849143743515015},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7386075854301453},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7264267206192017},{"id":"https://openalex.org/keywords/provisioning","display_name":"Provisioning","score":0.6320712566375732},{"id":"https://openalex.org/keywords/orchestration","display_name":"Orchestration","score":0.5473496913909912},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5134142637252808},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.4196377396583557},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4044171869754791},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38615357875823975},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.34838879108428955},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.16627389192581177},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12356427311897278}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8534458875656128},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7849143743515015},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7386075854301453},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7264267206192017},{"id":"https://openalex.org/C172191483","wikidata":"https://www.wikidata.org/wiki/Q1071806","display_name":"Provisioning","level":2,"score":0.6320712566375732},{"id":"https://openalex.org/C199168358","wikidata":"https://www.wikidata.org/wiki/Q3367000","display_name":"Orchestration","level":3,"score":0.5473496913909912},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5134142637252808},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.4196377396583557},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4044171869754791},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38615357875823975},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.34838879108428955},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.16627389192581177},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12356427311897278},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5220/0005668401980206","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005668401980206","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.5220/0005668401980206","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005668401980206","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W793270643","https://openalex.org/W1963575455","https://openalex.org/W1964137856","https://openalex.org/W1977859620","https://openalex.org/W2047100262","https://openalex.org/W2093625616","https://openalex.org/W2137653635","https://openalex.org/W2149992227","https://openalex.org/W2161427213"],"related_works":["https://openalex.org/W79913212","https://openalex.org/W2094884983","https://openalex.org/W2378898096","https://openalex.org/W560952460","https://openalex.org/W2290927522","https://openalex.org/W2618592742","https://openalex.org/W98143440","https://openalex.org/W4285727470","https://openalex.org/W4241787744","https://openalex.org/W2019038080"],"abstract_inverted_index":{"The":[0],"PAPAyA":[1],"platform":[2,56],"has":[3],"been":[4],"designed":[5],"to":[6,27,32],"ingest,":[7],"store":[8],"and":[9,38,46,61,65,85],"process":[10],"in":[11,34],"silico":[12],"large":[13],"genomics":[14,95],"datasets":[15],"using":[16],"analysis":[17],"algorithms":[18],"based":[19],"on":[20,51],"pre-defined":[21],"knowledge":[22],"databases":[23],"with":[24,93],"the":[25,94],"goal":[26],"offer":[28],"personalized":[29],"therapy":[30],"guidance":[31],"physicians":[33],"particular":[35],"for":[36],"cancers":[37],"infectious":[39],"diseases.":[40],"This":[41],"new":[42],"highly":[43],"scalable,":[44],"secure":[45],"extensible":[47],"framework":[48],"is":[49],"deployed":[50],"a":[52],"cloud-based":[53],"digital":[54],"health":[55],"that":[57,89],"provides":[58],"generic":[59],"provisioning":[60],"hosting":[62],"services,":[63],"identity":[64],"access":[66],"management,":[67],"workflow":[68],"orchestration,":[69],"device":[70],"cloud":[71],"capabilities,":[72],"notifications,":[73],"scheduling,":[74],"logging,":[75],"auditing,":[76],"metering":[77],"as":[78,80],"well":[79],"specific":[81],"patient":[82],"demographic,":[83],"clinical":[84],"wellness":[86],"data":[87],"services":[88],"can":[90],"be":[91],"combined":[92],"analytics":[96],"results.":[97]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
