{"id":"https://openalex.org/W2343768912","doi":"https://doi.org/10.5220/0005552901070116","title":"Sequence-based MicroRNA Clustering","display_name":"Sequence-based MicroRNA Clustering","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2343768912","doi":"https://doi.org/10.5220/0005552901070116","mag":"2343768912"},"language":"en","primary_location":{"id":"doi:10.5220/0005552901070116","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005552901070116","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0005552901070116","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001601254","display_name":"K\u00fcbra Narc\u0131","orcid":"https://orcid.org/0000-0002-3532-2152"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"K\u00fcbra Narc\u0131","raw_affiliation_strings":["Middle East Technical University, Turkey"],"affiliations":[{"raw_affiliation_string":"Middle East Technical University, Turkey","institution_ids":["https://openalex.org/I201799495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086873572","display_name":"Hasan O\u011ful","orcid":"https://orcid.org/0000-0002-6043-1860"},"institutions":[{"id":"https://openalex.org/I188740104","display_name":"Ba\u015fkent University","ror":"https://ror.org/02v9bqx10","country_code":"TR","type":"education","lineage":["https://openalex.org/I188740104"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Hasan O\u011ful","raw_affiliation_strings":["Ba\u015fkent University, Turkey"],"affiliations":[{"raw_affiliation_string":"Ba\u015fkent University, Turkey","institution_ids":["https://openalex.org/I188740104"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063400207","display_name":"Mahinur S. Akkaya","orcid":"https://orcid.org/0000-0002-0454-5898"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Mahinur Akkaya","raw_affiliation_strings":["Middle East Technical University, Turkey"],"affiliations":[{"raw_affiliation_string":"Middle East Technical University, Turkey","institution_ids":["https://openalex.org/I201799495"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001601254"],"corresponding_institution_ids":["https://openalex.org/I201799495"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0246217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"107","last_page":"116"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7550146579742432},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6915364265441895},{"id":"https://openalex.org/keywords/gene-silencing","display_name":"Gene silencing","score":0.6348931193351746},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6214042901992798},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6145334243774414},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5654439926147461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4668026268482208},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4329264163970947},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4057738482952118},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3470625877380371},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3371065855026245},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3083362579345703},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24598070979118347}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7550146579742432},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6915364265441895},{"id":"https://openalex.org/C119056186","wikidata":"https://www.wikidata.org/wiki/Q1431332","display_name":"Gene silencing","level":3,"score":0.6348931193351746},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6214042901992798},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6145334243774414},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5654439926147461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4668026268482208},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4329264163970947},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4057738482952118},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3470625877380371},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3371065855026245},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3083362579345703},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24598070979118347},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5220/0005552901070116","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005552901070116","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.5220/0005552901070116","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0005552901070116","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W2026936876"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"play":[2],"important":[3],"roles":[4],"in":[5,15,73,174],"post-transcriptional":[6],"gene":[7,16],"regulation.":[8],"Altogether,":[9],"understanding":[10],"integrative":[11],"and":[12,45,166],"co-operative":[13],"activities":[14],"regulation":[17,58],"is":[18,35,59],"conjugated":[19],"with":[20,48,159],"identification":[21,29],"of":[22,30,33,41,68,119,138,177],"miRNA":[23,57,86,122,146,151,179],"families.":[24],"In":[25,107,131],"current":[26],"applications,":[27],"the":[28,39,53,56,66,69,74,136,170],"such":[31],"groups":[32,87,123],"miRNAs":[34],"only":[36,144],"investigated":[37],"by":[38,65,91,102,116],"projections":[40],"their":[42,49,99],"expression":[43],"patterns":[44],"so":[46],"along":[47],"functional":[50,178],"relations.":[51],"Considering":[52],"fact":[54],"that":[55,84,142],"mediated":[60],"through":[61],"its":[62],"mature":[63,145],"sequence":[64,100,104,161],"recognition":[67],"target":[70],"mRNA":[71],"sequences":[72,147],"RISC":[75],"(RNA-induced":[76],"silencing":[77],"complex)":[78],"binding":[79],"regions,":[80],"we":[81,134],"argue":[82],"here":[83],"relevant":[85,150],"can":[88,113],"be":[89,114],"obtained":[90],"de":[92],"novo":[93],"clustering":[94,105],"them":[95],"solely":[96],"based":[97],"on":[98],"information,":[101],"a":[103,110,117,139],"approach.":[106],"this":[108,132,172],"way,":[109],"new":[111],"study":[112,141],"guided":[115],"set":[118],"previously":[120],"annotated":[121],"without":[124],"any":[125],"preliminary":[126],"experimentation":[127],"or":[128],"literature":[129],"evidence.":[130],"report,":[133],"presents":[135],"results":[137],"computational":[140],"considers":[143],"to":[148],"obtain":[149],"clusters":[152],"using":[153],"various":[154],"machine":[155],"learning":[156],"methods":[157],"employed":[158],"different":[160],"representation":[162],"schemes.":[163],"Both":[164],"statistical":[165],"biological":[167],"evaluations":[168],"encourages":[169],"use":[171],"approach":[173],"silico":[175],"assessment":[176],"groups.":[180]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
