{"id":"https://openalex.org/W2402422089","doi":"https://doi.org/10.5220/0004801001560163","title":"BioMetaDB: Ontology-based Classification and Extension of Biodatabases","display_name":"BioMetaDB: Ontology-based Classification and Extension of Biodatabases","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2402422089","doi":"https://doi.org/10.5220/0004801001560163","mag":"2402422089"},"language":"en","primary_location":{"id":"doi:10.5220/0004801001560163","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0004801001560163","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.5220/0004801001560163","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050150444","display_name":"Ching\u2010Fen Chang","orcid":"https://orcid.org/0000-0002-5650-035X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ching-Fen Chang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083264480","display_name":"Chang-Hsien Lin","orcid":"https://orcid.org/0000-0002-8624-6292"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chang-Hsien Lin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5105783349","display_name":"Chuan-Hsiung Chang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chuan-Hsiung Chang","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5050150444"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.20708287,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"156","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7891157865524292},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.733016848564148},{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.65887051820755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5928431749343872},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5801037549972534},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5678743720054626},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.43771296739578247},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4030319154262543},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.36752983927726746},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3510659635066986},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.28810983896255493},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.2384660243988037},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1272812783718109}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7891157865524292},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.733016848564148},{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.65887051820755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5928431749343872},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5801037549972534},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5678743720054626},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.43771296739578247},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4030319154262543},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.36752983927726746},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3510659635066986},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.28810983896255493},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.2384660243988037},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1272812783718109},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.5220/0004801001560163","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0004801001560163","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.5220/0004801001560163","is_oa":true,"landing_page_url":"https://doi.org/10.5220/0004801001560163","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2031028006","https://openalex.org/W2103017472","https://openalex.org/W2121677895","https://openalex.org/W2143969914","https://openalex.org/W2148159408","https://openalex.org/W2916251779"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2127299687","https://openalex.org/W2726617685","https://openalex.org/W1794266373","https://openalex.org/W2159818280","https://openalex.org/W22148886","https://openalex.org/W4255991504","https://openalex.org/W2111194626","https://openalex.org/W3135477004","https://openalex.org/W2074013882"],"abstract_inverted_index":{"The":[0],"recent":[1],"rapid":[2],"increase":[3],"in":[4],"high-throughput":[5],"biological":[6,100,113,150,166],"data":[7],"and":[8,23,49,67,114,152],"computational":[9],"tools":[10],"has":[11],"facilitated":[12],"the":[13,19,29,34,61,76,88,145,155,158],"establishments":[14],"of":[15,21,31,36,40,47,64,78,90,165],"numerous":[16],"biodatabases":[17],"as":[18],"repositories":[20],"biodata":[22],"bioinformatics":[24],"analysis":[25],"tools.":[26],"Due":[27],"to":[28,57,68,81,86,125,128],"inefficiency":[30],"database":[32],"categorization,":[33],"search":[35],"all":[37,60,130,144],"available":[38,62],"information":[39,101],"research":[41],"interests":[42,66],"costs":[43],"researchers":[44],"a":[45,162],"lot":[46],"time":[48],"efforts.":[50],"We":[51],"have":[52],"established":[53],"BioMetaDB":[54,80,94],"for":[55,112],"users":[56,127],"systematically":[58],"identify":[59],"databases":[63,70,133,146],"their":[65,131,148],"extend":[69],"on":[71,118,139],"relevance":[72,156],"biomedical":[73,91,140],"contents.":[74],"For":[75],"purpose":[77],"establishing":[79],"provide":[82],"semantically":[83],"annotated":[84],"corpus":[85],"markup":[87],"instances":[89],"ontology,":[92],"our":[93],"comprises":[95],"three":[96],"main":[97],"tasks:":[98],"(1)":[99],"retrieval":[102],"from":[103,171],"public":[104],"databases;":[105],"(2)":[106],"creating":[107],"an":[108],"integrated":[109,170],"ontology":[110,136],"repository":[111],"medical":[115],"studies":[116],"based":[117],"expert-tagged":[119],"corpus;":[120],"(3)":[121],"establish":[122],"web":[123],"services":[124],"enable":[126],"access":[129],"desired":[132],"by":[134,147],"systemically":[135],"query.":[137],"Based":[138],"ontologies,":[141],"we":[142],"indexed":[143],"relevant":[149],"features,":[151],"further":[153],"evaluated":[154],"among":[157],"databases.":[159],"Our":[160],"BioMetaDB,":[161],"comprehensive":[163],"compendium":[164],"databases,":[167],"is":[168],"currently":[169],"over":[172],"1,500":[173],"digital":[174],"sources.":[175]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
