{"id":"https://openalex.org/W4399157121","doi":"https://doi.org/10.5194/agile-giss-5-21-2024","title":"Lessons from spatial transcriptomics and computational geography in mapping the transcriptome","display_name":"Lessons from spatial transcriptomics and computational geography in mapping the transcriptome","publication_year":2024,"publication_date":"2024-05-30","ids":{"openalex":"https://openalex.org/W4399157121","doi":"https://doi.org/10.5194/agile-giss-5-21-2024"},"language":"en","primary_location":{"id":"doi:10.5194/agile-giss-5-21-2024","is_oa":true,"landing_page_url":"http://dx.doi.org/10.5194/agile-giss-5-21-2024","pdf_url":null,"source":{"id":"https://openalex.org/S4210203054","display_name":"AGILE GIScience Series","issn_l":"2700-8150","issn":["2700-8150"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AGILE: GIScience Series","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://dx.doi.org/10.5194/agile-giss-5-21-2024","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012361423","display_name":"Alexis Comber","orcid":"https://orcid.org/0000-0002-3652-7846"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexis Comber","raw_affiliation_strings":["Leeds Institute for Data Analytics, University of Leeds, UK","School of Geography, University of Leeds, Leeds, UK"],"raw_orcid":"https://orcid.org/0000-0002-3652-7846","affiliations":[{"raw_affiliation_string":"Leeds Institute for Data Analytics, University of Leeds, UK","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"School of Geography, University of Leeds, Leeds, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058528410","display_name":"Eleftherios Zormpas","orcid":"https://orcid.org/0000-0001-6573-8960"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eleftherios Zormpas","raw_affiliation_strings":["Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049869608","display_name":"Rachel Queen","orcid":"https://orcid.org/0000-0002-0414-2650"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rachel Queen","raw_affiliation_strings":["Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049863628","display_name":"Simon Cockell","orcid":"https://orcid.org/0000-0002-6831-9806"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon J. Cockell","raw_affiliation_strings":["Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04799272,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9527000188827515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9527000188827515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9473999738693237,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6315279006958008},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5806149244308472},{"id":"https://openalex.org/keywords/spatial-econometrics","display_name":"Spatial econometrics","score":0.5691799521446228},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5472958087921143},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5438772439956665},{"id":"https://openalex.org/keywords/rubric","display_name":"Rubric","score":0.49134722352027893},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.4805653393268585},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45933571457862854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40737900137901306},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.32372617721557617},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10991469025611877},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.09688255190849304},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09245890378952026},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.08247688412666321},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08189257979393005}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6315279006958008},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5806149244308472},{"id":"https://openalex.org/C97144632","wikidata":"https://www.wikidata.org/wiki/Q7574062","display_name":"Spatial econometrics","level":2,"score":0.5691799521446228},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5472958087921143},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5438772439956665},{"id":"https://openalex.org/C111640148","wikidata":"https://www.wikidata.org/wiki/Q847349","display_name":"Rubric","level":2,"score":0.49134722352027893},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.4805653393268585},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45933571457862854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40737900137901306},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.32372617721557617},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10991469025611877},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.09688255190849304},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09245890378952026},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.08247688412666321},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08189257979393005},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5194/agile-giss-5-21-2024","is_oa":true,"landing_page_url":"http://dx.doi.org/10.5194/agile-giss-5-21-2024","pdf_url":null,"source":{"id":"https://openalex.org/S4210203054","display_name":"AGILE GIScience Series","issn_l":"2700-8150","issn":["2700-8150"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AGILE: GIScience Series","raw_type":"journal-article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:214316","is_oa":true,"landing_page_url":"https://eprints.whiterose.ac.uk/214316/1/agile-giss-5-21-2024.pdf","pdf_url":"https://eprints.whiterose.ac.uk/214316/1/agile-giss-5-21-2024.pdf","source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.5194/agile-giss-5-21-2024","is_oa":true,"landing_page_url":"http://dx.doi.org/10.5194/agile-giss-5-21-2024","pdf_url":null,"source":{"id":"https://openalex.org/S4210203054","display_name":"AGILE GIScience Series","issn_l":"2700-8150","issn":["2700-8150"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AGILE: GIScience Series","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1809047520","https://openalex.org/W1973749534","https://openalex.org/W1990433983","https://openalex.org/W2766959028","https://openalex.org/W2788397482","https://openalex.org/W2943213517","https://openalex.org/W2953036966","https://openalex.org/W2957192340","https://openalex.org/W3048290715","https://openalex.org/W3115089074","https://openalex.org/W3190202966","https://openalex.org/W3203689742","https://openalex.org/W3216454795","https://openalex.org/W4206742719","https://openalex.org/W4221001986","https://openalex.org/W4233578221","https://openalex.org/W4247867130","https://openalex.org/W4312203233","https://openalex.org/W4321378485","https://openalex.org/W4363678594","https://openalex.org/W4387972838","https://openalex.org/W4389433377"],"related_works":["https://openalex.org/W2608038902","https://openalex.org/W4298358525","https://openalex.org/W2354654203","https://openalex.org/W2734394801","https://openalex.org/W3148227991","https://openalex.org/W1585366496","https://openalex.org/W4388773377","https://openalex.org/W2629615104","https://openalex.org/W274531366","https://openalex.org/W2683300720"],"abstract_inverted_index":{"Abstract.":[0],"Spatial":[1,114],"data,":[2],"data":[3,14,20,86,98],"with":[4,42,70,108],"some":[5],"form":[6],"of":[7,23,36,84,92,95,130],"location":[8],"attached,":[9],"are":[10,15,40,81],"the":[11,34,37,93,118,126],"norm:":[12],"all":[13],"spatial":[16,19,28,97,131],"now.":[17],"However":[18],"requires":[21],"consideration":[22],"three":[24],"critical":[25],"characteristics,":[26],"observation":[27],"auto-correlated,":[29],"process":[30],"spatially":[31],"non-stationarity":[32],"and":[33,44,48,53,61,106,113,116,124],"effect":[35],"MAUP.":[38],"Geographers":[39],"familiar":[41],"these":[43,96],"have":[45],"tools,":[46],"rubrics":[47],"workflows":[49],"to":[50,76,122],"accommodate":[51],"them":[52],"understand":[54],"their":[55],"impacts":[56,94],"on":[57],"statical":[58],"inference,":[59],"understanding":[60,91],"prediction.":[62],"However,":[63],"increasingly":[64],"researchers":[65],"in":[66,110],"non":[67],"geographical":[68],"domains,":[69],"no":[71],"experience":[72],"of,":[73],"or":[74,79,89],"exposure":[75],"quantitative":[77],"geography":[78],"GIScience":[80,121],"undertaking":[82],"analyses":[83],"such":[85],"without":[87],"full":[88],"any":[90],"properties.":[99],"This":[100],"short":[101],"paper":[102],"describes":[103],"recent":[104],"interactions":[105],"work":[107],"research":[109],"gene":[111],"analysis":[112],"Transcriptomics,":[115],"highlight":[117],"opportunities":[119],"for":[120],"inform":[123],"steer":[125],"many":[127],"new":[128],"users":[129],"data.":[132]},"counts_by_year":[],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
