{"id":"https://openalex.org/W2130520161","doi":"https://doi.org/10.5075/epfl-thesis-4881","title":"Mathematical Modeling of T-Cell Experimental Data","display_name":"Mathematical Modeling of T-Cell Experimental Data","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2130520161","doi":"https://doi.org/10.5075/epfl-thesis-4881","mag":"2130520161"},"language":"en","primary_location":{"id":"pmh:oai:infoscience.tind.io:152005","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/54071","pdf_url":"http://infoscience.epfl.ch/record/152005","source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doctoral thesis"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/152005","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063875266","display_name":"Irina Baltcheva","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Baltcheva, Irina","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5063875266"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9617999792098999,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/il-2-receptor","display_name":"IL-2 receptor","score":0.652224063873291},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.634462833404541},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5597794055938721},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.545674204826355},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5354042053222656},{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.49826622009277344},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.47483569383621216},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4433365762233734},{"id":"https://openalex.org/keywords/acquired-immune-system","display_name":"Acquired immune system","score":0.4263845682144165},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33356598019599915}],"concepts":[{"id":"https://openalex.org/C79484868","wikidata":"https://www.wikidata.org/wiki/Q5971673","display_name":"IL-2 receptor","level":4,"score":0.652224063873291},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.634462833404541},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5597794055938721},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.545674204826355},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5354042053222656},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.49826622009277344},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.47483569383621216},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4433365762233734},{"id":"https://openalex.org/C193419808","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired immune system","level":3,"score":0.4263845682144165},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33356598019599915},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:infoscience.tind.io:152005","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/54071","pdf_url":"http://infoscience.epfl.ch/record/152005","source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doctoral thesis"},{"id":"pmh:oai:infoscience.epfl.ch:152005","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/152005","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"doi:10.5075/epfl-thesis-4881","is_oa":true,"landing_page_url":"https://doi.org/10.5075/epfl-thesis-4881","pdf_url":null,"source":{"id":"https://openalex.org/S4306400488","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"thesis"},{"id":"mag:2130520161","is_oa":false,"landing_page_url":"https://infoscience.epfl.ch/record/152005","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:infoscience.tind.io:152005","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/54071","pdf_url":"http://infoscience.epfl.ch/record/152005","source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doctoral thesis"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.41999998688697815,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130520161.pdf","grobid_xml":"https://content.openalex.org/works/W2130520161.grobid-xml"},"referenced_works_count":112,"referenced_works":["https://openalex.org/W29164706","https://openalex.org/W1492370649","https://openalex.org/W1507160172","https://openalex.org/W1530782041","https://openalex.org/W1531095893","https://openalex.org/W1535603654","https://openalex.org/W1547552384","https://openalex.org/W1547859938","https://openalex.org/W1560277370","https://openalex.org/W1560562878","https://openalex.org/W1562634384","https://openalex.org/W1567420244","https://openalex.org/W1575480425","https://openalex.org/W1588272261","https://openalex.org/W1621578458","https://openalex.org/W1628288142","https://openalex.org/W1805570726","https://openalex.org/W1894820614","https://openalex.org/W1911945597","https://openalex.org/W1935040042","https://openalex.org/W1951754169","https://openalex.org/W1964010927","https://openalex.org/W1965931877","https://openalex.org/W1966129458","https://openalex.org/W1967134681","https://openalex.org/W1977180934","https://openalex.org/W1977818211","https://openalex.org/W1978410307","https://openalex.org/W1978895719","https://openalex.org/W1982266845","https://openalex.org/W1987585278","https://openalex.org/W1988646315","https://openalex.org/W1994500037","https://openalex.org/W1994782555","https://openalex.org/W1996465395","https://openalex.org/W1997946355","https://openalex.org/W1998209775","https://openalex.org/W2002726823","https://openalex.org/W2007631222","https://openalex.org/W2007804892","https://openalex.org/W2011368430","https://openalex.org/W2012729754","https://openalex.org/W2014634158","https://openalex.org/W2016452430","https://openalex.org/W2016638271","https://openalex.org/W2019522474","https://openalex.org/W2021106791","https://openalex.org/W2021546542","https://openalex.org/W2022257958","https://openalex.org/W2023827282","https://openalex.org/W2026628287","https://openalex.org/W2031473244","https://openalex.org/W2032251250","https://openalex.org/W2032311934","https://openalex.org/W2033889756","https://openalex.org/W2037383417","https://openalex.org/W2037566060","https://openalex.org/W2039683692","https://openalex.org/W2039743346","https://openalex.org/W2040171681","https://openalex.org/W2041390189","https://openalex.org/W2042844150","https://openalex.org/W2043071551","https://openalex.org/W2044035130","https://openalex.org/W2045740840","https://openalex.org/W2046953729","https://openalex.org/W2058645689","https://openalex.org/W2061679005","https://openalex.org/W2061680337","https://openalex.org/W2062142808","https://openalex.org/W2067263905","https://openalex.org/W2070393014","https://openalex.org/W2072853625","https://openalex.org/W2075326117","https://openalex.org/W2077450760","https://openalex.org/W2079742406","https://openalex.org/W2082494258","https://openalex.org/W2084761573","https://openalex.org/W2090851364","https://openalex.org/W2092905533","https://openalex.org/W2092990181","https://openalex.org/W2095864773","https://openalex.org/W2096584806","https://openalex.org/W2097811455","https://openalex.org/W2103903744","https://openalex.org/W2105381977","https://openalex.org/W2107535503","https://openalex.org/W2110523319","https://openalex.org/W2112506009","https://openalex.org/W2119860862","https://openalex.org/W2120294390","https://openalex.org/W2122005037","https://openalex.org/W2126440374","https://openalex.org/W2129767277","https://openalex.org/W2141329963","https://openalex.org/W2143367922","https://openalex.org/W2147821231","https://openalex.org/W2149915530","https://openalex.org/W2150453791","https://openalex.org/W2153550772","https://openalex.org/W2155982020","https://openalex.org/W2156964052","https://openalex.org/W2157091226","https://openalex.org/W2157633667","https://openalex.org/W2158092720","https://openalex.org/W2159584193","https://openalex.org/W2160131052","https://openalex.org/W2160700813","https://openalex.org/W2162261192","https://openalex.org/W2168628806","https://openalex.org/W2172055586","https://openalex.org/W2188244809"],"related_works":["https://openalex.org/W3141197896","https://openalex.org/W1790382773","https://openalex.org/W1968104837","https://openalex.org/W1996962455","https://openalex.org/W2151227723","https://openalex.org/W2907129563","https://openalex.org/W2119051534","https://openalex.org/W1491270159","https://openalex.org/W1987585278","https://openalex.org/W2151206011","https://openalex.org/W180472347","https://openalex.org/W137203417","https://openalex.org/W2395314295","https://openalex.org/W2126440374","https://openalex.org/W2981749128","https://openalex.org/W2014392153","https://openalex.org/W2588089097","https://openalex.org/W2902688368","https://openalex.org/W133072645","https://openalex.org/W37734314"],"abstract_inverted_index":{"T":[0,33,42,62,123,155,166,189],"lymphocytes":[1],"(T":[2],"cells)":[3],"are":[4,14,72,99,121,126,220,259,285,309,557],"key":[5],"components":[6],"of":[7,21,28,59,81,119,131,153,161,165,186,206,243,246,257,264,282,297,316,320,327,330,366,388,395,408,418,426,444,458,462,468,476,483,494,509,529,554,560,564,567,598,628,643],"the":[8,25,32,46,79,85,92,110,129,151,159,162,178,183,203,237,240,274,283,321,325,331,334,337,353,363,370,380,385,392,399,403,406,413,416,419,449,456,465,469,473,481,491,501,538,561,565,568,602,607,621,626],"adaptive":[9],"immune":[10,111,276],"system.":[11],"These":[12],"cells":[13,90,124,156,190],"able":[15],"to":[16,24,94,145,150,158,231,324,526,594],"recognize":[17],"an":[18,96,207,291,485],"enormous":[19],"variety":[20],"pathogens":[22],"thanks":[23],"great":[26],"specificity":[27],"their":[29,193],"trans-membrane":[30],"proteins,":[31],"cell":[34,43,63,167],"receptors":[35],"(TCRs).":[36],"TCR":[37,477],"diversity":[38,164,478,492,562,641],"is":[39,171,300,341,360,391,410,452,524,534,612],"created":[40],"during":[41],"maturation":[44],"in":[45,75,102,128,218,336,362,402,552],"thymus":[47],"by":[48,211,261,269,479],"somatic":[49],"gene-segment":[50],"rearrangements":[51],"and":[52,142,157,239,250,346,351,357,415,506,512,542,563,570,590],"random":[53,288],"nucleotide":[54],"additions":[55],"or":[56,439],"deletions.":[57],"Out":[58],"all":[60],"possible":[61],"clones":[64],"bearing":[65],"specific":[66],"TCRs,":[67],"only":[68],"a":[69,199,215,224,262,270,292,298,432,436,441,459,517,527,558,584,616,644],"small":[70],"fraction":[71],"successfully":[73],"released":[74,101],"peripheral":[76,115,442],"blood":[77],"as":[78,287,430],"result":[80],"clonal":[82],"selection.":[83],"Among":[84],"selected":[86],"clones,":[87],"some":[88],"self-reactive":[89,133],"with":[91,311,634],"capacity":[93,242],"induce":[95],"auto-immune":[97],"disease":[98],"erroneously":[100],"periphery.":[103],"To":[104],"compensate":[105],"for":[106,412,455,606,624,640],"this":[107,136],"functional":[108],"flaw,":[109],"system":[112],"has":[113,500],"developed":[114],"control":[116,130],"mechanisms.":[117],"One":[118],"them":[120],"regulatory":[122,154,188],"that":[125,228,378,397,488,520,537,583,611,620],"specialized":[127],"harmful":[132],"clones.":[134],"In":[135,177,464,515],"thesis,":[137],"we":[138,181,229,372,471,581,618],"combine":[139],"mathematical":[140,226,579],"modeling":[141],"experimental":[143,486,599],"data":[144,312,322],"address":[146,472],"immunological":[147],"questions":[148],"related":[149],"dynamics":[152,185,256,308],"measurement":[160,493],"structural":[163],"receptors.":[168],"The":[169,209,254,295,306,532,548],"dissertation":[170],"split":[172],"into":[173,446],"two":[174,244,328],"main":[175],"parts.":[176],"first":[179],"part,":[180],"model":[182,227,307,604],"lifelong":[184,255],"human":[187,314],"(Tregs).":[191],"Despite":[192],"limited":[194],"proliferation":[195,241,407,451],"capacity,":[196],"Tregs":[197,213,258,339,348,359,390,409],"constitute":[198],"population":[200,340],"maintained":[201,342],"over":[202,343,503],"entire":[204],"lifetime":[205],"individual.":[208],"means":[210],"which":[212],"sustain":[214],"stable":[216,460],"pool":[217,461],"vivo":[219],"controversial.":[221],"We":[222,636],"define":[223],"novel":[225],"use":[230],"evaluate":[232],"several":[233],"biological":[234],"scenarios":[235,377],"about":[236],"origins":[238],"subsets":[245],"Tregs:":[247],"precursor":[248,345,356],"CD4+CD25+-CD45RO-":[249],"mature":[251,347,358,389,400,427],"CD4+CD25+CD45RO+":[252],"cells.":[253,280],"described":[260],"set":[263],"ordinary":[265],"differential":[266],"equations,":[267],"driven":[268],"stochastic":[271],"process":[272],"representing":[273],"major":[275],"reactions":[277],"involving":[278,588],"these":[279],"Most":[281],"parameters":[284],"considered":[286],"variables":[289],"having":[290],"priori":[293],"distribution.":[294],"likelihood":[296],"scenario":[299],"estimated":[301],"using":[302,369],"Monte":[303],"Carlo":[304],"simulations.":[305],"validated":[310],"from":[313],"donors":[315],"different":[317],"ages.":[318],"Analysis":[319],"led":[323],"identification":[326],"properties":[329],"dynamics:":[332],"(a)":[333],"equilibrium":[335],"CD4+CD25+":[338],"both":[344],"pools":[349],"together,":[350],"(b)":[352],"ratio":[354],"between":[355],"inverted":[361],"early":[364],"years":[365],"adulthood.":[367],"Then,":[368],"model,":[371,587],"identified":[373],"four":[374],"biologically":[375],"relevant":[376],"have":[379,571],"above":[381],"properties:":[382],"(1)":[383],"if":[384,421],"unique":[386],"source":[387],"antigendriven":[393],"differentiation":[394],"precursors":[396],"acquire":[398],"profile":[401],"periphery,":[404],"then":[405,448,543],"essential":[411],"development":[414,457],"maintenance":[417],"pool;":[420],"there":[422],"exist":[423],"other":[424,504],"sources":[425],"Tregs,":[428,447],"such":[429,536],"(2)":[431],"homeostatic":[433],"regulation,":[434],"(3)":[435],"thymic":[437],"migration,":[438],"(4)":[440],"conversion":[443],"effectors":[445],"antigen-induced":[450],"not":[453],"necessary":[454],"Tregs.":[463],"second":[466,575],"part":[467],"dissertation,":[470],"general":[474],"question":[475],"improving":[480],"interpretation":[482],"AmpliCot,":[484],"technique":[487],"aims":[489],"at":[490],"nucleic":[495],"acid":[496],"sequences.":[497],"This":[498],"procedure":[499],"advantage":[502],"cloning":[505],"sequencing":[507],"techniques":[508],"being":[510],"time-":[511],"expense-":[513],"effective.":[514],"short,":[516],"fluorescent":[518],"dye":[519],"binds":[521],"double-stranded":[522],"DNA":[523,539],"added":[525],"sample":[528,533,569],"PCR-amplified":[530],"DNA.":[531],"melted,":[535],"becomes":[540],"single-stranded,":[541],"re-annealed":[544],"under":[545],"stringent":[546],"conditions.":[547],"annealing":[549],"kinetics,":[550],"measured":[551],"terms":[553],"fluorescence":[555,609],"intensity,":[556],"function":[559],"concentration":[566],"been":[572],"interpreted":[573],"assuming":[574],"order":[576],"kinetics.":[577],"Using":[578],"modeling,":[580],"show":[582,619],"more":[585],"detailed":[586],"heteroduplex-":[589],"transient-duplex":[591],"formation,":[592],"leads":[593],"significantly":[595],"better":[596],"fits":[597],"data.":[600],"Moreover,":[601],"new":[603],"accounts":[605],"diversity-dependent":[608],"loss":[610],"typically":[613],"observed.":[614],"As":[615],"consequence,":[617],"original":[622],"method":[623],"interpreting":[625],"results":[627],"AmpliCot":[629],"experiments":[630],"should":[631],"be":[632],"applied":[633],"caution.":[635],"suggest":[637],"alternative":[638],"methods":[639],"extrapolation":[642],"sample.":[645]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
