{"id":"https://openalex.org/W7172348241","doi":"https://doi.org/10.48550/arxiv.2607.29347","title":"SeekBrain: An Autonomous Multi-Agent System for Accelerating Neuroscience Discovery","display_name":"SeekBrain: An Autonomous Multi-Agent System for Accelerating Neuroscience Discovery","publication_year":2026,"publication_date":"2026-07-31","ids":{"openalex":"https://openalex.org/W7172348241","doi":"https://doi.org/10.48550/arxiv.2607.29347"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2607.29347","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.29347","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2607.29347","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5144271571","display_name":"Jiamin Wu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Jiamin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050760922","display_name":"Peishan Xiang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiang, Peishan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144282416","display_name":"Jingyang Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Jingyang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144245154","display_name":"Yuqing Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhu, Yuqing","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144311874","display_name":"Yuxi Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Yuxi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144277863","display_name":"Ling Luo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luo, Ling","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125494880","display_name":"Qihao Zheng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zheng, Qihao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144284136","display_name":"Jialiang Zu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zu, Jialiang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069516494","display_name":"Yongchao Wu","orcid":"https://orcid.org/0000-0002-0945-707X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Yongchao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144265041","display_name":"Mindong Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Mindong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144252551","display_name":"Haitao Wu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Haitao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144309974","display_name":"Chaofan Hu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hu, Chaofan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084376514","display_name":"Ye Sun","orcid":"https://orcid.org/0000-0003-1086-8017"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sun, Yijie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124935493","display_name":"Yuqi Hang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hang, Yuqi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144249917","display_name":"Yu Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhu, Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144299196","display_name":"Shuo Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Shuo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144309968","display_name":"Yue Fan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fan, Yue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144286804","display_name":"Shiyang Feng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Feng, Shiyang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144246673","display_name":"Wanghan Xu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu, Wanghan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091053445","display_name":"Tianlei Zhang","orcid":"https://orcid.org/0000-0002-2096-6887"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Tianlei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144250493","display_name":"Jie Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Jie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144306480","display_name":"Wenlong Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Wenlong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144254226","display_name":"Bo Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Bo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144289718","display_name":"Kai Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Kai","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144286325","display_name":"Lei Bai","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bai, Lei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058203667","display_name":"Mianxin Liu","orcid":"https://orcid.org/0000-0001-5171-778X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Mianxin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5144283814","display_name":"Wanli Ouyang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ouyang, Wanli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111259037","display_name":"Jiulin Du","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Du, Jiulin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5132633929","display_name":"Chunfeng Song","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Song, Chunfeng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9138000011444092,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9138000011444092,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.028999999165534973,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.011599999852478504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6402000188827515},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5778999924659729},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5156000256538391},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.420199990272522},{"id":"https://openalex.org/keywords/systems-neuroscience","display_name":"Systems neuroscience","score":0.35659998655319214},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.3447999954223633},{"id":"https://openalex.org/keywords/neural-decoding","display_name":"Neural decoding","score":0.3425999879837036}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7124000191688538},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6402000188827515},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5778999924659729},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5156000256538391},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.420199990272522},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4083000123500824},{"id":"https://openalex.org/C31288803","wikidata":"https://www.wikidata.org/wiki/Q2617516","display_name":"Systems neuroscience","level":5,"score":0.35659998655319214},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.3447999954223633},{"id":"https://openalex.org/C40743351","wikidata":"https://www.wikidata.org/wiki/Q7002049","display_name":"Neural decoding","level":3,"score":0.3425999879837036},{"id":"https://openalex.org/C164100034","wikidata":"https://www.wikidata.org/wiki/Q1870629","display_name":"Loose coupling","level":2,"score":0.33379998803138733},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3310000002384186},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.3292999863624573},{"id":"https://openalex.org/C2993059035","wikidata":"https://www.wikidata.org/wiki/Q1073","display_name":"Brain research","level":2,"score":0.2973000109195709},{"id":"https://openalex.org/C131584629","wikidata":"https://www.wikidata.org/wiki/Q4308705","display_name":"Coupling (piping)","level":2,"score":0.2946999967098236},{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.2896000146865845},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.28949999809265137},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.2603999972343445},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.25920000672340393}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2607.29347","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.29347","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2607.29347","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.29347","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.7037550210952759,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Modern":[0],"neuroscience":[1,40],"relies":[2],"on":[3,81,85],"integrating":[4],"multi-scale,":[5],"multimodal":[6],"datasets":[7],"to":[8,38,115],"uncover":[9],"the":[10,73,86,134],"neural":[11,119],"principles":[12],"underlying":[13],"intelligence.":[14],"However,":[15],"analytical":[16,79],"challenges":[17],"posed":[18],"by":[19],"highly":[20],"heterogeneous":[21],"data":[22,48,114],"and":[23,46,70,78,112,125,148],"fragmented":[24],"workflows":[25],"increasingly":[26],"constrain":[27],"discoveries.":[28],"Here":[29],"we":[30],"introduce":[31],"SeekBrain,":[32],"an":[33],"autonomous":[34],"multi-agent":[35],"framework":[36,74],"designed":[37],"accelerate":[39],"discovery":[41],"through":[42],"domain-grounded":[43],"hierarchical":[44],"planning":[45,69],"cross-modal":[47],"analysis.":[49],"SeekBrain":[50,92,108,144],"dynamically":[51],"constructs":[52],"a":[53,126,137,146],"repertoire":[54],"of":[55,121,129],"analysis":[56,100],"recipes":[57],"extracted":[58],"from":[59],"code-paper":[60],"pairs.":[61],"By":[62],"coupling":[63],"this":[64],"codified":[65],"expertise":[66],"with":[67],"agentic":[68],"execution":[71],"engines,":[72],"scalably":[75],"generates":[76],"hypotheses":[77],"pipelines":[80],"demand.":[82],"Systematic":[83],"evaluation":[84],"expert-annotated":[87],"BrainArena":[88],"benchmark":[89],"demonstrates":[90],"that":[91],"substantially":[93],"outperforms":[94],"state-of-the-art":[95],"agent":[96],"baselines":[97],"across":[98,133],"various":[99],"tasks.":[101],"Crucially,":[102],"when":[103],"deployed":[104],"in":[105,136,155],"real-world":[106],"research,":[107],"integrated":[109],"behavioral,":[110],"neural,":[111],"anatomical":[113],"reveal":[116],"structured,":[117],"distributed":[118],"representations":[120],"larval":[122],"zebrafish":[123],"behavior":[124],"shared":[127],"axis":[128],"regional":[130],"decoding":[131],"strength":[132],"brain":[135],"mouse":[138],"decision-making":[139],"task.":[140],"These":[141],"results":[142],"establish":[143],"as":[145],"scalable":[147],"practical":[149],"tool":[150],"for":[151],"accelerating":[152],"data-driven":[153],"discoveries":[154],"neuroscience.":[156]},"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2026-08-04T00:00:00"}
