{"id":"https://openalex.org/W7167910205","doi":"https://doi.org/10.48550/arxiv.2607.08758","title":"Ideas Have Genomes: Benchmarking Scientific Lineage Reasoning and Lineage-Grounded Idea Generation","display_name":"Ideas Have Genomes: Benchmarking Scientific Lineage Reasoning and Lineage-Grounded Idea Generation","publication_year":2026,"publication_date":"2026-07-09","ids":{"openalex":"https://openalex.org/W7167910205","doi":"https://doi.org/10.48550/arxiv.2607.08758"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2607.08758","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.08758","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2607.08758","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5140414616","display_name":"Yifan Zhou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Yifan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140386356","display_name":"Qihao Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Qihao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140390120","display_name":"Yan Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Yan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140440647","display_name":"Donggang Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Donggang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140401597","display_name":"Xiru Hu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hu, Xiru","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140423701","display_name":"Hokin Deng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deng, Hokin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140381158","display_name":"Ziyang Gong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gong, Ziyang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113903386","display_name":"X J Zhou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Xuanyi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140399302","display_name":"Huacan Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Huacan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008886708","display_name":"Xiangchao Yan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yan, Xiangchao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140385282","display_name":"Wanghan Xu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu, Wanghan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140448630","display_name":"Wenlong Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Wenlong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140386058","display_name":"Shaofeng Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Shaofeng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140385353","display_name":"Yue Zhou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Yue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140408656","display_name":"Yifan Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Yifan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140398508","display_name":"Zhihang Zhong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhong, Zhihang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5140426355","display_name":"Xue Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Xue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.1459999978542328,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.1459999978542328,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0778999999165535,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.06400000303983688,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.7983999848365784},{"id":"https://openalex.org/keywords/inheritance","display_name":"Inheritance (genetic algorithm)","score":0.7071999907493591},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5938000082969666},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5073000192642212},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4449000060558319},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.42809998989105225}],"concepts":[{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.7983999848365784},{"id":"https://openalex.org/C2780902518","wikidata":"https://www.wikidata.org/wiki/Q6033780","display_name":"Inheritance (genetic algorithm)","level":3,"score":0.7071999907493591},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5938000082969666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5184000134468079},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5073000192642212},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4449000060558319},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.42809998989105225},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4147999882698059},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4009999930858612},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.3982999920845032},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33970001339912415},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.32670000195503235},{"id":"https://openalex.org/C2992562121","wikidata":"https://www.wikidata.org/wiki/Q3817808","display_name":"Scientific reasoning","level":2,"score":0.3215999901294708},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.29409998655319214},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.27630001306533813},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2689000070095062}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2607.08758","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.08758","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2607.08758","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2607.08758","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Scientific":[0],"ideas":[1],"rarely":[2],"start":[3],"from":[4,176],"a":[5,42,66,76,146,152,158,162,192],"blank":[6],"page.":[7],"They":[8],"inherit":[9,168],"mechanisms,":[10],"repair":[11],"known":[12],"limitations,":[13],"and":[14,48,75,88,108,139,179,206],"recombine":[15],"pieces":[16],"of":[17,68,161],"earlier":[18],"work,":[19,178],"much":[20],"like":[21],"biological":[22],"genomes.":[23],"Current":[24],"benchmarks":[25],"still":[26],"say":[27],"little":[28],"about":[29],"whether":[30,151],"AI":[31],"systems":[32],"can":[33,154],"follow":[34],"this":[35],"inheritance":[36,135],"structure.":[37],"We":[38],"present":[39],"IdeaGene-Bench":[40],"(IG-Bench),":[41],"benchmark":[43,97],"for":[44,183],"scientific":[45,115],"lineage":[46,101,129,140,164,204,208],"reasoning":[47,130],"lineage-grounded":[49],"idea":[50],"generation.":[51],"IG-Bench":[52],"is":[53,63],"organized":[54],"around":[55],"the":[56,169],"IdeaGene":[57],"framework:":[58],"each":[59],"paper":[60],"or":[61],"proposal":[62,153],"represented":[64],"as":[65,157],"set":[67],"minimal,":[69],"typed,":[70],"evidence-grounded":[71],"Idea":[72,105,132,171],"Genome":[73,106,133,172],"objects,":[74,107,173],"GenomeDiff":[77,111],"aligns":[78],"these":[79],"objects":[80],"to":[81],"record":[82],"inheritance,":[83],"mutation,":[84],"loss,":[85],"external":[86],"import,":[87],"novel":[89],"insertion":[90],"under":[91],"six":[92],"operational":[93],"evolutionary":[94,137],"dynamics.":[95],"The":[96,195],"contains":[98],"1,961":[99],"golden":[100],"traces,":[102],"1,085":[103],"curated":[104],"920":[109],"pairwise":[110],"records":[112],"across":[113,131],"10":[114],"domains.":[116],"It":[117],"supports":[118],"two":[119],"evaluations.":[120],"IG-Exam":[121],"(42":[122],"task":[123],"types,":[124],"1,029":[125],"instances)":[126],"tests":[127],"closed-form":[128],"abstraction,":[134],"tracing,":[136],"reasoning,":[138,205],"verification.":[141],"IG-Arena":[142],"evaluates":[143],"generation":[144],"with":[145],"lineage-conditioned":[147],"Population-Evolution":[148],"Score(PES),":[149],"asking":[150],"be":[155],"inserted":[156],"coherent":[159],"descendant":[160],"given":[163],"population:":[165],"it":[166],"should":[167],"right":[170],"vary":[174],"meaningfully":[175],"nearby":[177],"offer":[180],"selection":[181],"value":[182],"future":[184],"research.":[185],"Experiments":[186],"on":[187,203],"14":[188],"LLM-based":[189],"scientists":[190],"expose":[191],"compositional":[193],"bottleneck.":[194],"strongest":[196],"system":[197,211],"reaches":[198],"only":[199],"27.3%":[200],"exact":[201],"accuracy":[202],"structured":[207],"context":[209],"reshuffles":[210],"rankings":[212],"rather":[213],"than":[214],"helping":[215],"every":[216],"participant":[217],"uniformly.":[218]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2026-07-11T00:00:00"}
