{"id":"https://openalex.org/W7164161361","doi":"https://doi.org/10.48550/arxiv.2606.10021","title":"SpineReport: Automated 3D Quantification and Reporting of Lumbar Spine Degeneration on MRI","display_name":"SpineReport: Automated 3D Quantification and Reporting of Lumbar Spine Degeneration on MRI","publication_year":2026,"publication_date":"2026-06-08","ids":{"openalex":"https://openalex.org/W7164161361","doi":"https://doi.org/10.48550/arxiv.2606.10021"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2606.10021","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.10021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2606.10021","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018529173","display_name":"Nathan Molinier","orcid":"https://orcid.org/0000-0002-8312-8952"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Molinier, Nathan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134269565","display_name":"Adrian A. Marth","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marth, Adrian A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138356694","display_name":"Reto Sutter","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sutter, Reto","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017552908","display_name":"Christoph Germann","orcid":"https://orcid.org/0000-0001-9273-0032"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Germann, Christoph","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010794120","display_name":"Jacob Connolly","orcid":"https://orcid.org/0009-0007-8315-8338"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Connolly, Jacob A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114621843","display_name":"Mathieu Guay-Paquet","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guay-Paquet, Mathieu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136522162","display_name":"Nathan D. Schilaty","orcid":"https://orcid.org/0000-0002-6038-7126"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schilaty, Nathan D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038548007","display_name":"Kenneth A. Weber","orcid":"https://orcid.org/0000-0002-0916-9174"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weber, Kenneth A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5138328863","display_name":"Julien Cohen-Adad","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cohen-Adad, Julien","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.8478000164031982,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.8478000164031982,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10238","display_name":"Spine and Intervertebral Disc Pathology","score":0.1264999955892563,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11518","display_name":"Cervical and Thoracic Myelopathy","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6704000234603882},{"id":"https://openalex.org/keywords/lumbar-spine","display_name":"Lumbar spine","score":0.5271000266075134},{"id":"https://openalex.org/keywords/spinal-stenosis","display_name":"Spinal stenosis","score":0.5044000148773193},{"id":"https://openalex.org/keywords/spinal-canal","display_name":"Spinal canal","score":0.4634000062942505},{"id":"https://openalex.org/keywords/lumbar","display_name":"Lumbar","score":0.4514000117778778},{"id":"https://openalex.org/keywords/lumbar-spinal-stenosis","display_name":"Lumbar spinal stenosis","score":0.4309999942779541},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.42640000581741333},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.39089998602867126}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.7946000099182129},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6704000234603882},{"id":"https://openalex.org/C3017433307","wikidata":"https://www.wikidata.org/wiki/Q405478","display_name":"Lumbar spine","level":2,"score":0.5271000266075134},{"id":"https://openalex.org/C2780175798","wikidata":"https://www.wikidata.org/wiki/Q1478321","display_name":"Spinal stenosis","level":3,"score":0.5044000148773193},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.4977000057697296},{"id":"https://openalex.org/C2779326565","wikidata":"https://www.wikidata.org/wiki/Q781983","display_name":"Spinal canal","level":3,"score":0.4634000062942505},{"id":"https://openalex.org/C44575665","wikidata":"https://www.wikidata.org/wiki/Q1293405","display_name":"Lumbar","level":2,"score":0.4514000117778778},{"id":"https://openalex.org/C2779631646","wikidata":"https://www.wikidata.org/wiki/Q17164695","display_name":"Lumbar spinal stenosis","level":3,"score":0.4309999942779541},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.42640000581741333},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.39089998602867126},{"id":"https://openalex.org/C2780007028","wikidata":"https://www.wikidata.org/wiki/Q2343082","display_name":"Stenosis","level":2,"score":0.36500000953674316},{"id":"https://openalex.org/C2911149213","wikidata":"https://www.wikidata.org/wiki/Q1478321","display_name":"Spinal canal stenosis","level":4,"score":0.3456000089645386},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.3158999979496002},{"id":"https://openalex.org/C2779354088","wikidata":"https://www.wikidata.org/wiki/Q15467261","display_name":"Degeneration (medical)","level":2,"score":0.2939000129699707},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.29030001163482666},{"id":"https://openalex.org/C2779889316","wikidata":"https://www.wikidata.org/wiki/Q642836","display_name":"Neuroradiology","level":3,"score":0.28380000591278076},{"id":"https://openalex.org/C2779835254","wikidata":"https://www.wikidata.org/wiki/Q405478","display_name":"Lumbar vertebrae","level":3,"score":0.2800000011920929},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.27399998903274536},{"id":"https://openalex.org/C2780811821","wikidata":"https://www.wikidata.org/wiki/Q1641175","display_name":"Rachis","level":2,"score":0.2538999915122986},{"id":"https://openalex.org/C2984588014","wikidata":"https://www.wikidata.org/wiki/Q730675","display_name":"Quantitative assessment","level":2,"score":0.2502000033855438}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2606.10021","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.10021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2606.10021","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.10021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7283092737197876,"display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Lumbar":[0],"spine":[1,87],"conditions":[2],"are":[3,48,58],"a":[4],"leading":[5],"cause":[6],"of":[7,13,85,140],"disability":[8],"worldwide,":[9],"yet":[10],"reliable":[11],"quantification":[12],"degeneration":[14],"from":[15,41,98],"MRI":[16],"remains":[17],"challenging.":[18],"In":[19],"clinical":[20],"practice,":[21],"analysis":[22,84],"is":[23,35,227],"predominantly":[24],"performed":[25],"in":[26],"two":[27],"dimensions":[28],"(2D),":[29],"as":[30,229],"manual":[31],"three-dimensional":[32],"(3D)":[33],"assessment":[34],"time-consuming.":[36],"However,":[37],"2D":[38],"measurements":[39],"suffer":[40],"limited":[42],"reproducibility,":[43],"particularly":[44],"when":[45],"anatomical":[46,91],"structures":[47],"not":[49],"aligned":[50],"with":[51,132,163,168,203],"the":[52,93,102,173,208],"imaging":[53],"plane.":[54],"Existing":[55],"automated":[56,78],"approaches":[57],"often":[59],"restricted":[60],"to":[61],"2D,":[62],"rely":[63],"on":[64],"discrete":[65],"grading,":[66],"or":[67],"lack":[68],"robustness":[69],"and":[70,110,116,121,137,156,182,189],"interpretability.":[71],"We":[72],"introduce":[73],"SpineReport,":[74],"an":[75,230],"open-source,":[76],"fully":[77],"framework":[79],"for":[80,151,219],"comprehensive":[81],"3D":[82],"morphometric":[83],"lumbar":[86],"MRI.":[88],"Leveraging":[89],"robust":[90,223],"segmentations,":[92],"method":[94],"extracts":[95],"quantitative":[96],"metrics":[97],"key":[99],"structures,":[100],"including":[101],"spinal":[103,105,141],"canal,":[104,153],"cord,":[106],"vertebrae,":[107],"intervertebral":[108],"discs,":[109],"foramina.":[111],"These":[112],"include":[113],"both":[114],"morphological":[115],"signal-based":[117],"features,":[118],"enabling":[119],"cross-subject":[120],"longitudinal":[122],"assessment.":[123],"SpineReport":[124,226],"further":[125],"generates":[126],"subject-specific":[127],"reports":[128],"that":[129],"allow":[130],"comparison":[131],"cohort":[133],"distributions,":[134],"improving":[135],"interpretability":[136],"objective":[138],"characterization":[139],"morphology.":[142],"Clinical":[143],"relevance":[144],"was":[145],"evaluated":[146],"against":[147],"radiologist-reported":[148],"severity":[149],"grades":[150],"central":[152,164],"lateral":[154,197,204],"recess,":[155],"foraminal":[157,220],"stenosis.":[158],"Metrics":[159],"showed":[160],"strong":[161,187],"associations":[162,200,216],"canal":[165],"stenosis":[166,221],"severity,":[167],"T2-weighted":[169],"CSF":[170,205],"signal":[171,206],"providing":[172],"highest":[174],"performance":[175],"(AUC":[176,193,211],"=":[177,212],"0.95).":[178],"Canal":[179],"AP":[180],"diameter":[181],"area":[183],"ratios":[184],"also":[185],"demonstrated":[186],"correlations":[188],"high":[190],"discriminative":[191],"ability":[192],"&gt;":[194],"0.80).":[195],"For":[196],"recess":[198],"stenosis,":[199],"were":[201,217],"moderate,":[202],"being":[207],"most":[209],"informative":[210],"0.73).":[213],"No":[214],"significant":[215],"observed":[218],"despite":[222],"region-of-interest":[224],"extraction.":[225],"released":[228],"open-access":[231],"tool:":[232],"https://ivadomed.github.io/SpineReport/":[233]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-06-11T00:00:00"}
