{"id":"https://openalex.org/W7163992904","doi":"https://doi.org/10.48550/arxiv.2606.08366","title":"MetaboliSim: a Python implementation of the Mader model for dynamic and steady-state simulation of muscular energy metabolism","display_name":"MetaboliSim: a Python implementation of the Mader model for dynamic and steady-state simulation of muscular energy metabolism","publication_year":2026,"publication_date":"2026-06-06","ids":{"openalex":"https://openalex.org/W7163992904","doi":"https://doi.org/10.48550/arxiv.2606.08366"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2606.08366","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.08366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2606.08366","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046895075","display_name":"Katharina Dunst","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dunst, Katharina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051709314","display_name":"Vincent Scharf","orcid":"https://orcid.org/0000-0001-7229-9898"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Scharf, Vincent","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014410709","display_name":"Clemens Hesse","orcid":"https://orcid.org/0000-0002-5118-2516"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hesse, Clemens","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5009068491","display_name":"Alexander Asteroth","orcid":"https://orcid.org/0000-0003-1133-9424"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Asteroth, Alexander","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10157","display_name":"Sports Performance and Training","score":0.6805999875068665,"subfield":{"id":"https://openalex.org/subfields/2732","display_name":"Orthopedics and Sports Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10157","display_name":"Sports Performance and Training","score":0.6805999875068665,"subfield":{"id":"https://openalex.org/subfields/2732","display_name":"Orthopedics and Sports Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11209","display_name":"Cardiovascular and exercise physiology","score":0.20659999549388885,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11399","display_name":"Muscle metabolism and nutrition","score":0.01889999955892563,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ode","display_name":"Ode","score":0.7091000080108643},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6948999762535095},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6628000140190125},{"id":"https://openalex.org/keywords/sprint","display_name":"Sprint","score":0.37299999594688416},{"id":"https://openalex.org/keywords/system-dynamics","display_name":"System dynamics","score":0.3614000082015991},{"id":"https://openalex.org/keywords/blood-lactate","display_name":"Blood lactate","score":0.36000001430511475}],"concepts":[{"id":"https://openalex.org/C34862557","wikidata":"https://www.wikidata.org/wiki/Q178985","display_name":"Ode","level":2,"score":0.7091000080108643},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6948999762535095},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6628000140190125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48179998993873596},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.42100000381469727},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.38909998536109924},{"id":"https://openalex.org/C2776868573","wikidata":"https://www.wikidata.org/wiki/Q46855","display_name":"Sprint","level":2,"score":0.37299999594688416},{"id":"https://openalex.org/C77405623","wikidata":"https://www.wikidata.org/wiki/Q598451","display_name":"System dynamics","level":2,"score":0.3614000082015991},{"id":"https://openalex.org/C2992422156","wikidata":"https://www.wikidata.org/wiki/Q161249","display_name":"Blood lactate","level":4,"score":0.36000001430511475},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.35850000381469727},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.3379000127315521},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.3086000084877014},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.29760000109672546}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2606.08366","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.08366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2606.08366","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.08366","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.6647984385490417,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"The":[0,131],"Mader":[1,212],"model":[2,54,74,98,182,213],"is":[3],"the":[4,53,77,104,134,147,175,181,204,210],"most":[5],"widely":[6],"used":[7],"mathematical":[8],"framework":[9],"for":[10],"muscular":[11],"energy":[12],"metabolism":[13],"in":[14,107],"German-language":[15],"sport":[16],"science,":[17],"underpinning":[18],"lactate":[19,22,152,170],"diagnostics,":[20],"maximal":[21],"steady":[23],"state":[24],"(MLSS)":[25],"estimation":[26],"and":[27,85,88,95,103,109,120,128,141,174,187,199,221],"training":[28],"prescription.":[29],"Despite":[30],"decades":[31],"of":[32,69,209],"use,":[33],"neither":[34],"its":[35,40],"dynamic":[36,73],"ODE":[37,79],"formulation":[38],"nor":[39],"steady-state":[41,97],"equations":[42,183],"have":[43],"been":[44],"available":[45,207],"as":[46],"open":[47],"code,":[48],"leaving":[49],"results":[50],"based":[51],"on":[52,223],"impossible":[55],"to":[56],"reproduce":[57],"independently.":[58],"We":[59,112],"close":[60],"this":[61],"gap":[62],"with":[63,90,158,197,201],"MetaboliSim,":[64],"an":[65],"open-source":[66],"Python":[67],"implementation":[68,114,132,208],"both":[70,159],"formulations:":[71],"a":[72,91,96,188],"that":[75,99],"integrates":[76],"five-variable":[78],"system":[80],"(phosphate":[81],"potential,":[82],"$\\dot{V}\\mathrm{O}_2$,":[83],"muscle":[84],"blood":[86,151],"lactate,":[87],"glycogen)":[89],"fourth-order":[92],"Runge-Kutta":[93],"scheme,":[94],"computes":[100],"MLSS":[101,163,192],"power":[102,193],"lactate-power":[105],"relationship":[106],"one-":[108],"two-compartment":[110],"variants.":[111],"verified":[113],"correctness":[115],"against":[116],"published":[117,135,224],"reference":[118,136],"values":[119],"assessed":[121],"physiological":[122,166],"plausibility":[123],"across":[124],"constant-load,":[125],"step-test,":[126],"sprint":[127],"running":[129],"protocols.":[130],"reproduces":[133],"output":[137],"within":[138],"stated":[139],"tolerances":[140],"remains":[142],"numerically":[143],"stable":[144],"throughout":[145],"(halving":[146],"time":[148],"step":[149],"changes":[150],"by":[153],"less":[154],"than":[155],"0.01":[156],"mmol/L),":[157],"formulations":[160],"yielding":[161],"congruent":[162],"estimates.":[164],"Key":[165],"behaviour":[167],"($\\dot{V}\\mathrm{O}_2$":[168],"on-kinetics,":[169],"accumulation,":[171],"PCr":[172],"dynamics":[173],"sub/supra-MLSS":[176],"separation)":[177],"emerges":[178],"directly":[179],"from":[180],"without":[184],"protocol-specific":[185],"tuning,":[186],"sensitivity":[189],"analysis":[190],"shows":[191],"varying":[194],"approximately":[195],"linearly":[196],"$\\dot{V}\\mathrm{O}_{2\\max}$":[198],"nonlinearly":[200],"$\\dot{V}\\mathrm{La}_{\\max}$.":[202],"As":[203],"first":[205],"openly":[206],"complete":[211],"(AGPL-3.0),":[214],"MetaboliSim":[215],"lets":[216],"independent":[217],"groups":[218],"reproduce,":[219],"verify":[220],"build":[222],"model-based":[225],"results.":[226],"Source":[227],"code:":[228],"https://codeberg.org/3phos/metabolisim;":[229],"Platform:":[230],"https://metabolisim.org":[231]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2026-06-10T00:00:00"}
