{"id":"https://openalex.org/W7163351959","doi":"https://doi.org/10.48550/arxiv.2606.03906","title":"scTranslation: A Comprehensive Benchmark for Single-Cell Multi-Omics Modality Translation","display_name":"scTranslation: A Comprehensive Benchmark for Single-Cell Multi-Omics Modality Translation","publication_year":2026,"publication_date":"2026-06-02","ids":{"openalex":"https://openalex.org/W7163351959","doi":"https://doi.org/10.48550/arxiv.2606.03906"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2606.03906","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.03906","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2606.03906","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087182888","display_name":"Jiabei Cheng","orcid":"https://orcid.org/0009-0008-7601-4800"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheng, Jiabei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137779310","display_name":"Jingbo Zhou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Jingbo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137749636","display_name":"Jun Xia","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xia, Jun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137761864","display_name":"Changkai Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Changkai","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137764297","display_name":"Zhen Lei","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lei, Zhen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137750666","display_name":"Chang Yu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu, Chang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5137797356","display_name":"Stan Z. Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Stan Z.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8716999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8716999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.036400001496076584,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.013799999840557575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8881000280380249},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.7250999808311462},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.7109000086784363},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6608999967575073},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6567000150680542},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6514999866485596}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8881000280380249},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.7250999808311462},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.7109000086784363},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6883999705314636},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6608999967575073},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6567000150680542},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6514999866485596},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5379999876022339},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45739999413490295},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.3871999979019165},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.29829999804496765},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.28459998965263367},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2653000056743622},{"id":"https://openalex.org/C203005215","wikidata":"https://www.wikidata.org/wiki/Q79798","display_name":"Machine translation","level":2,"score":0.25859999656677246}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2606.03906","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.03906","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2606.03906","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.03906","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4425780177116394}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Simultaneous":[0],"measurement":[1],"of":[2,17,37,51,59,65,140],"multiple":[3],"omics":[4],"modalities":[5],"in":[6,45,63],"single":[7],"cells":[8],"enables":[9],"researchers":[10],"to":[11,25,159],"gain":[12],"a":[13,35,57,78,97,137],"more":[14],"comprehensive":[15,79,98],"understanding":[16],"cellular":[18],"states":[19],"and":[20,31,69,95,116],"regulatory":[21],"mechanisms.":[22],"However,":[23],"due":[24],"high":[26],"experimental":[27],"costs,":[28],"significant":[29],"noise,":[30],"incomplete":[32],"modality":[33,41,84],"coverage,":[34],"variety":[36],"computational":[38],"methods":[39],"for":[40,81,152],"translation":[42,52,85,90],"have":[43,126],"emerged":[44],"recent":[46],"years.":[47],"Despite":[48],"the":[49],"development":[50],"models,":[53,94],"there":[54],"is":[55,157,165],"still":[56],"lack":[58],"systematic":[60],"benchmark":[61,80,156],"evaluation":[62,67,99],"terms":[64],"datasets,":[66,91],"metrics,":[68],"influencing":[70],"factors.":[71],"To":[72],"address":[73],"this,":[74],"we":[75,103,135],"present":[76],"scTranslation,":[77],"single-cell":[82],"multi-omics":[83],"tasks.":[86],"It":[87],"includes":[88],"diverse":[89],"integrates":[92],"state-of-the-art":[93],"provides":[96],"metrics.":[100],"In":[101],"addition,":[102],"assess":[104],"model":[105,123],"performance":[106,124],"under":[107],"different":[108],"scenarios,":[109],"such":[110],"as":[111],"feature":[112,114],"selection,":[113],"quality,":[115],"few-shot":[117],"settings.":[118],"These":[119],"factors":[120],"significantly":[121],"affect":[122],"but":[125],"rarely":[127],"been":[128],"systematically":[129],"studied":[130],"before.":[131],"Leveraging":[132],"this":[133],"benchmark,":[134],"conduct":[136],"large-scale":[138],"study":[139],"current":[141],"methods,":[142],"report":[143],"many":[144],"insightful":[145],"findings":[146],"that":[147],"open":[148],"up":[149],"new":[150],"possibilities":[151],"future":[153,161],"development.":[154],"The":[155,163],"open-sourced":[158],"facilitate":[160],"research.":[162],"code":[164],"anonymously":[166],"released":[167],"at":[168],"https://github.com/Bunnybeibei/scTranslation.":[169]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-06-04T00:00:00"}
