{"id":"https://openalex.org/W7163178222","doi":"https://doi.org/10.48550/arxiv.2606.01329","title":"Conditioned free-energy density of proteins using unbalanced solutions to constraint satisfaction problems","display_name":"Conditioned free-energy density of proteins using unbalanced solutions to constraint satisfaction problems","publication_year":2026,"publication_date":"2026-05-31","ids":{"openalex":"https://openalex.org/W7163178222","doi":"https://doi.org/10.48550/arxiv.2606.01329"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2606.01329","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.01329","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2606.01329","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049287396","display_name":"Pratik Worah","orcid":"https://orcid.org/0000-0002-2739-1246"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Worah, Pratik","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080677582","display_name":"Subhash Khot","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Khot, Subhash","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5137652686","display_name":"Srinivasa Varadhan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Varadhan, Srinivasa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7982000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7982000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10002","display_name":"Advanced Chemical Physics Studies","score":0.02590000070631504,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.021900000050663948,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5958999991416931},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48100000619888306},{"id":"https://openalex.org/keywords/norm","display_name":"Norm (philosophy)","score":0.47999998927116394},{"id":"https://openalex.org/keywords/probability-density-function","display_name":"Probability density function","score":0.4359000027179718},{"id":"https://openalex.org/keywords/constraint-satisfaction-problem","display_name":"Constraint satisfaction problem","score":0.420199990272522},{"id":"https://openalex.org/keywords/upper-and-lower-bounds","display_name":"Upper and lower bounds","score":0.40689998865127563}],"concepts":[{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5958999991416931},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48100000619888306},{"id":"https://openalex.org/C191795146","wikidata":"https://www.wikidata.org/wiki/Q3878446","display_name":"Norm (philosophy)","level":2,"score":0.47999998927116394},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.4580000042915344},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4429999887943268},{"id":"https://openalex.org/C197055811","wikidata":"https://www.wikidata.org/wiki/Q207522","display_name":"Probability density function","level":2,"score":0.4359000027179718},{"id":"https://openalex.org/C199622910","wikidata":"https://www.wikidata.org/wiki/Q1128326","display_name":"Constraint satisfaction problem","level":3,"score":0.420199990272522},{"id":"https://openalex.org/C77553402","wikidata":"https://www.wikidata.org/wiki/Q13222579","display_name":"Upper and lower bounds","level":2,"score":0.40689998865127563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3499000072479248},{"id":"https://openalex.org/C44616089","wikidata":"https://www.wikidata.org/wiki/Q30158686","display_name":"Constraint satisfaction","level":3,"score":0.33489999175071716},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.3278000056743622},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3021000027656555},{"id":"https://openalex.org/C137836250","wikidata":"https://www.wikidata.org/wiki/Q984063","display_name":"Optimization problem","level":2,"score":0.27720001339912415},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.26409998536109924}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2606.01329","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.01329","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2606.01329","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2606.01329","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"score":0.78574138879776,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0],"show":[1],"that":[2],"computing":[3],"the":[4,38,45,48,61,69],"log-partition":[5],"function":[6],"(free-energy)":[7],"of":[8,40,68],"conditioned":[9],"inhomogeneous":[10],"Curie--Weiss":[11],"spin":[12],"Hamiltonians":[13],"reduces":[14],"to":[15,44],"an":[16],"unbalanced":[17],"$2":[18],"\\to":[19],"1$":[20],"norm":[21],"computation,":[22],"and":[23,64],"design":[24],"a":[25,33,52],"polynomial-time":[26],"SDP":[27],"algorithm":[28],"for":[29,37],"this":[30],"problem":[31],"with":[32],"lower":[34],"bound":[35],"proof":[36],"amount":[39],"unbalance":[41],"achieved.":[42],"Applied":[43],"protein":[46,70],"Ubiquitin,":[47],"framework":[49],"starts":[50],"from":[51],"known":[53],"crystal":[54],"structure,":[55],"explores":[56],"alternative":[57],"backbone":[58],"conformations":[59],"across":[60],"free-energy":[62],"landscape,":[63],"identifies":[65],"flexible":[66],"regions":[67],"while":[71],"preserving":[72],"its":[73],"native":[74],"secondary":[75],"structure.":[76]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-06-03T00:00:00"}
