{"id":"https://openalex.org/W7162454464","doi":"https://doi.org/10.48550/arxiv.2605.25970","title":"PathWISE: Multi-Agent Cancer Pathway Triaging Ontology Learning from Clinical Flowcharts","display_name":"PathWISE: Multi-Agent Cancer Pathway Triaging Ontology Learning from Clinical Flowcharts","publication_year":2026,"publication_date":"2026-05-25","ids":{"openalex":"https://openalex.org/W7162454464","doi":"https://doi.org/10.48550/arxiv.2605.25970"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2605.25970","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.25970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2605.25970","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5137049468","display_name":"Sofiat Abioye","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Abioye, Sofiat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136342684","display_name":"Ufaq Khan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Khan, Ufaq","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137034885","display_name":"Shazad Ashraf","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ashraf, Shazad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113708683","display_name":"Mohammed A. Butt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Butt, Mohammed Adil","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044152755","display_name":"Andrew D. Beggs","orcid":"https://orcid.org/0000-0003-0784-2967"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Beggs, Andrew D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093356365","display_name":"Adam Byfield","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Byfield, Adam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114211551","display_name":"Anusha Jose","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jose, Anusha","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093356366","display_name":"William Poulett","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qadir, Junaid","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5137045028","display_name":"Ben Wallace","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bilal, Muhammad","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5981000065803528,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5981000065803528,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.10119999945163727,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.03909999877214432,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.47029998898506165},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4650000035762787},{"id":"https://openalex.org/keywords/audit","display_name":"Audit","score":0.4537000060081482},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.444599986076355},{"id":"https://openalex.org/keywords/flowchart","display_name":"Flowchart","score":0.4300000071525574},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.39879998564720154},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.3580000102519989},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.3481999933719635},{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.34279999136924744}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7784000039100647},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4837999939918518},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.47029998898506165},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4650000035762787},{"id":"https://openalex.org/C199521495","wikidata":"https://www.wikidata.org/wiki/Q181487","display_name":"Audit","level":2,"score":0.4537000060081482},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.444599986076355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44119998812675476},{"id":"https://openalex.org/C72041958","wikidata":"https://www.wikidata.org/wiki/Q185092","display_name":"Flowchart","level":2,"score":0.4300000071525574},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.39879998564720154},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.3580000102519989},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.3481999933719635},{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.34279999136924744},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.3260999917984009},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.32600000500679016},{"id":"https://openalex.org/C80958533","wikidata":"https://www.wikidata.org/wiki/Q1047174","display_name":"Audit trail","level":3,"score":0.3257000148296356},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.32019999623298645},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.32019999623298645},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.30869999527931213},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.30559998750686646},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.3034000098705292},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.2890999913215637},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.287200003862381},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.28139999508857727},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.2752000093460083},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.26829999685287476},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.26579999923706055},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.26570001244544983},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.2648000121116638},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2603999972343445}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2605.25970","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.25970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2605.25970","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.25970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7768797874450684}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Clinical":[0,56],"pathways":[1,117],"are":[2],"disseminated":[3],"as":[4,62],"visual":[5],"flowcharts":[6],"where":[7],"spatial":[8],"topology,":[9],"arrow":[10],"direction,":[11],"colour":[12],"coding,":[13],"and":[14,43,101,123,166,188],"font":[15],"weight":[16],"encode":[17],"critical":[18],"triage":[19],"logic":[20,104],"that":[21,156],"remains":[22],"inaccessible":[23],"to":[24,128,181],"computational":[25],"systems.":[26],"We":[27],"present":[28],"PathWISE,":[29],"a":[30,38,44,73,82,189],"five-phase":[31],"pipeline":[32],"combining":[33],"four":[34,142],"LLM-based":[35],"agents":[36,68],"with":[37,150],"deterministic":[39,78,185],"depth-first":[40],"search":[41],"auditor":[42],"Java":[45,98],"compiler":[46,191],"critic,":[47],"transforming":[48],"these":[49],"non-computable":[50],"artefacts":[51],"into":[52,72],"validated,":[53],"executable":[54],"HL7":[55],"Quality":[57],"Language":[58],"(CQL)":[59],"libraries":[60],"deployable":[61],"FHIR":[63],"CDS":[64],"Hooks":[65],"services.":[66],"Purpose-built":[67],"extract":[69],"flowchart":[70],"structure":[71],"typed":[74],"directed":[75],"graph,":[76],"perform":[77],"path":[79],"enumeration,":[80],"conduct":[81],"structured":[83,138],"semantic":[84],"audit":[85],"of":[86,107],"every":[87,193],"node's":[88],"computability,":[89],"generate":[90],"terminology-constrained":[91],"CQL":[92],"definitions":[93],"verified":[94],"by":[95],"the":[96,133],"official":[97],"CQL-to-ELM":[99],"compiler,":[100],"produce":[102],"routing":[103],"covering":[105],"100%":[106,146],"enumerated":[108],"patient":[109],"journeys.":[110],"Demonstrated":[111],"across":[112,141],"five":[113],"UK":[114],"NHS":[115],"cancer":[116],"(colorectal,":[118],"lung,":[119],"skin,":[120],"upper":[121],"GI,":[122],"breast),":[124],"PathWISE":[125,176],"audits":[126],"up":[127],"183":[129],"nodes":[130,152],"(182":[131],"under":[132],"Hybrid":[134],"configuration),":[135],"identifies":[136],"544":[137],"governance":[139,161],"findings":[140],"issue":[143],"categories,":[144],"achieves":[145],"syntactic":[147],"compilation":[148],"success,":[149],"UNCOMPUTABLE":[151],"receiving":[153],"false":[154],"placeholders":[155],"preserve":[157],"compilability":[158],"while":[159,184],"surfacing":[160],"gaps":[162],"for":[163,172],"clinical":[164],"review,":[165],"produces":[167],"zero":[168],"hallucinated":[169],"terminology":[170],"codes":[171],"dictionary-covered":[173],"concepts.":[174],"Critically,":[175],"confines":[177],"non-deterministic":[178],"LLM":[179],"inference":[180],"knowledge":[182],"extraction":[183],"graph":[186],"mathematics":[187],"standard":[190],"underpin":[192],"verification":[194],"step.":[195]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-05-27T00:00:00"}
