{"id":"https://openalex.org/W7161944800","doi":"https://doi.org/10.48550/arxiv.2605.21186","title":"SAM-Sode: Towards Faithful Explanations for Tiny Bacteria Detection","display_name":"SAM-Sode: Towards Faithful Explanations for Tiny Bacteria Detection","publication_year":2026,"publication_date":"2026-05-20","ids":{"openalex":"https://openalex.org/W7161944800","doi":"https://doi.org/10.48550/arxiv.2605.21186"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2605.21186","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.21186","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2605.21186","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5136682584","display_name":"Wanying Tan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tan, Wanying","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136615606","display_name":"Shuo Yan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yan, Shuo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136659632","display_name":"Dazhi Huang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huang, Dazhi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103097958","display_name":"Yazheng Liu","orcid":"https://orcid.org/0009-0005-5573-6861"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Yazheng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101639532","display_name":"Zili Shao","orcid":"https://orcid.org/0000-0002-2173-2847"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shao, Zili","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102622134","display_name":"Rufeng Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Rufeng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108294333","display_name":"Hechang Chen","orcid":"https://orcid.org/0000-0001-7835-9556"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Hechang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102465463","display_name":"Mude Shi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shi, Mude","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058749198","display_name":"\u5180\u5929\u661f","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ji, Tianxing","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5136632795","display_name":"Sihong Xie","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xie, Sihong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.4124000072479248,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.4124000072479248,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.14630000293254852,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.14000000059604645,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9514999985694885},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.5864999890327454},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.44940000772476196},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.42649999260902405},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4196000099182129},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41359999775886536}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9514999985694885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671999990940094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6601999998092651},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.5864999890327454},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.44940000772476196},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.42649999260902405},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4196000099182129},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41359999775886536},{"id":"https://openalex.org/C2776151529","wikidata":"https://www.wikidata.org/wiki/Q3045304","display_name":"Object detection","level":3,"score":0.3287999927997589},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.31850001215934753},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.3179999887943268},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.310699999332428},{"id":"https://openalex.org/C143299363","wikidata":"https://www.wikidata.org/wiki/Q900584","display_name":"Attribution","level":2,"score":0.2903999984264374},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29010000824928284},{"id":"https://openalex.org/C58328972","wikidata":"https://www.wikidata.org/wiki/Q184609","display_name":"Expert system","level":2,"score":0.2824000120162964},{"id":"https://openalex.org/C104319648","wikidata":"https://www.wikidata.org/wiki/Q1412040","display_name":"Figure\u2013ground","level":3,"score":0.25110000371932983}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2605.21186","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.21186","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2605.21186","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2605.21186","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.7793405652046204}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Interpretability":[0],"in":[1,13],"object":[2,161],"detection":[3],"provides":[4],"crucial":[5],"confidence":[6],"support":[7],"for":[8],"clinical":[9],"auxiliary":[10],"diagnosis.":[11],"However,":[12],"tiny":[14,160],"bacteria":[15,131],"detection,":[16],"traditional":[17],"explanation":[18],"methods":[19],"often":[20],"suffer":[21],"from":[22,42],"blurred":[23],"foreground":[24],"boundaries":[25],"and":[26,39,92,109,140,153],"diffuse":[27],"feature":[28,73],"attribution":[29,74],"due":[30],"to":[31,88,112],"the":[32,48,80,84,96,146,156],"extreme":[33],"sparsity":[34],"of":[35,50,83,95,159],"target":[36],"morphological":[37,53,93],"features":[38],"severe":[40],"interference":[41],"complex":[43,134],"backgrounds.":[44],"Such":[45],"limitations":[46],"hinder":[47],"provision":[49],"logically":[51],"coherent":[52,117],"evidence.":[54],"To":[55],"bridge":[56],"this":[57],"gap,":[58],"we":[59,100],"propose":[60],"a":[61,102],"novel":[62],"eXplainable":[63],"AI":[64],"(XAI)":[65],"framework,":[66],"SAM-Sode.":[67],"The":[68],"framework":[69],"innovatively":[70],"transforms":[71],"initial":[72],"maps":[75],"into":[76],"geometry-aware":[77],"prompts,":[78],"leveraging":[79],"prior":[81],"knowledge":[82],"foundation":[85],"model":[86],"(SAM3)":[87],"achieve":[89],"spatial":[90],"refinement":[91],"reconstruction":[94],"explanatory":[97],"mappings.":[98],"Furthermore,":[99],"introduce":[101],"dual-constraint":[103],"mechanism":[104],"based":[105],"on":[106,128],"physical":[107],"significance":[108],"geometric":[110],"alignment":[111],"perform":[113],"instance-level":[114],"denoising,":[115],"generating":[116],"explanations":[118],"that":[119,145],"better":[120],"align":[121],"with":[122,133],"human":[123],"expert":[124],"intuition.":[125],"Experimental":[126],"results":[127],"our":[129],"self-constructed":[130],"dataset":[132],"circuit":[135],"backgrounds":[136],"(containing":[137],"2,524":[138],"images)":[139],"other":[141],"public":[142],"datasets":[143],"demonstrate":[144],"proposed":[147],"method":[148],"effectively":[149],"suppresses":[150],"background":[151],"redundancy":[152],"significantly":[154],"enhances":[155],"decision-making":[157],"transparency":[158],"detection.":[162]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-05-22T00:00:00"}
