{"id":"https://openalex.org/W7157757098","doi":"https://doi.org/10.48550/arxiv.2604.25605","title":"Health System Scale Semantic Search Across Unstructured Clinical Notes","display_name":"Health System Scale Semantic Search Across Unstructured Clinical Notes","publication_year":2026,"publication_date":"2026-04-28","ids":{"openalex":"https://openalex.org/W7157757098","doi":"https://doi.org/10.48550/arxiv.2604.25605"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2604.25605","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2604.25605","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2604.25605","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055674398","display_name":"Faith Wavinya Mutinda","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mutinda, Faith Wavinya","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134844874","display_name":"Spandana Makeneni","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Makeneni, Spandana","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067424297","display_name":"Anna Lin","orcid":"https://orcid.org/0000-0003-0216-4386"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lin, Anna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005297330","display_name":"Shivaji Dutta","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dutta, Shivaji","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078874818","display_name":"Irit R. Rasooly","orcid":"https://orcid.org/0000-0002-1368-534X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rasooly, Irit R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134823299","display_name":"Patrick Dibussolo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dibussolo, Patrick","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024335192","display_name":"Shivani Kamath Belman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Belman, Shivani Kamath","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134839225","display_name":"Hessam Shahriari","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shahriari, Hessam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134839074","display_name":"Kevin Murphy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Murphy, Kevin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032368880","display_name":"Alex Ruan","orcid":"https://orcid.org/0000-0002-0867-2296"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruan, Alex B.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083137077","display_name":"Barbara H. Chaiyachati","orcid":"https://orcid.org/0000-0001-7324-6245"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chaiyachati, Barbara H.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134828904","display_name":"Sanjay Chainani","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chainani, Sanjay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127908677","display_name":"Robert W. Grundmeier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grundmeier, Robert W.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134862922","display_name":"Scott M. Haag","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Haag, Scott M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044632700","display_name":"Jeffrey M. Miller","orcid":"https://orcid.org/0000-0002-2206-9311"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Miller, Jeffrey M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029500924","display_name":"Heather Griffis","orcid":"https://orcid.org/0000-0002-9284-4707"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Griffis, Heather M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5132930861","display_name":"Ian M Campbell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Campbell, Ian M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.39719998836517334,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.39719998836517334,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.25029999017715454,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.09220000356435776,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.4767000079154968},{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic search","score":0.4544000029563904},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.429500013589859},{"id":"https://openalex.org/keywords/chart","display_name":"Chart","score":0.4027000069618225},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.3837999999523163},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.3785000145435333},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.3668000102043152},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.3628000020980835},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.3598000109195709}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7770000100135803},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7103000283241272},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.4767000079154968},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.4544000029563904},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.429500013589859},{"id":"https://openalex.org/C190812933","wikidata":"https://www.wikidata.org/wiki/Q28923","display_name":"Chart","level":2,"score":0.4027000069618225},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.3837999999523163},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.3785000145435333},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.3668000102043152},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.3628000020980835},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.3598000109195709},{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.3416000008583069},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3352000117301941},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.33070001006126404},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.31619998812675476},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.3140000104904175},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30979999899864197},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.30959999561309814},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.2978000044822693},{"id":"https://openalex.org/C203357204","wikidata":"https://www.wikidata.org/wiki/Q1089605","display_name":"Chunking (psychology)","level":2,"score":0.28700000047683716},{"id":"https://openalex.org/C161156560","wikidata":"https://www.wikidata.org/wiki/Q1638872","display_name":"Document retrieval","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.27219998836517334},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.2700999975204468},{"id":"https://openalex.org/C2778180026","wikidata":"https://www.wikidata.org/wiki/Q18378163","display_name":"Semantic heterogeneity","level":4,"score":0.26660001277923584},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.26249998807907104},{"id":"https://openalex.org/C192800085","wikidata":"https://www.wikidata.org/wiki/Q5258530","display_name":"Semantic interoperability","level":3,"score":0.258899986743927},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2515999972820282}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2604.25605","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2604.25605","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2604.25605","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2604.25605","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5863854885101318}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Introduction:":[0],"Semantic":[1],"search,":[2,221],"which":[3],"retrieves":[4],"documents":[5],"based":[6],"on":[7,156],"conceptual":[8],"similarity":[9],"rather":[10],"than":[11],"keywords,":[12],"offers":[13],"advantages":[14],"for":[15],"retrieval":[16,117],"of":[17,29,31,144,191],"clinical":[18,32,61,121,160,227],"information.":[19],"However,":[20],"deploying":[21],"semantic":[22,50,167,187,207],"search":[23,51,168,188,208],"across":[24,163],"health":[25],"systems,":[26],"comprising":[27],"hundreds":[28],"millions":[30],"notes,":[33],"presents":[34],"formidable":[35],"engineering,":[36],"cost,":[37],"and":[38,90,105,119,127,211,224],"governance":[39,95],"challenges":[40],"that":[41],"have":[42],"prevented":[43],"institutional":[44,217],"adoption.":[45],"Methods:":[46],"We":[47,97],"deployed":[48],"a":[49,54,86,93,109],"system":[52,72,100,135,215],"at":[53,199],"large":[55],"children's":[56],"hospital":[57],"indexing":[58],"166":[59],"million":[60,64,69],"notes":[62],"(484":[63],"embedding":[65],"vectors)":[66],"from":[67],"1.68":[68],"patients.":[70],"The":[71,134,214],"uses":[73],"instruction-tuned":[74],"qwen3-embedding-0.6B":[75],"embeddings,":[76],"stores":[77],"vectors":[78],"with":[79,140,149,193],"storage-optimized":[80],"indexing,":[81],"maintains":[82],"full-text":[83],"metadata":[84],"in":[85],"low-latency":[87],"key-value":[88],"store,":[89],"operates":[91],"within":[92],"HIPAA-compliant":[94],"framework.":[96],"evaluated":[98],"the":[99,103,157],"by":[101,171,202],"optimizing":[102],"model":[104],"chunking":[106],"strategy":[107],"using":[108],"physician-authored":[110],"benchmark,":[111],"characterizing":[112],"full-scale":[113],"performance":[114],"(cost,":[115],"latency,":[116],"quality),":[118],"assessing":[120],"utility":[122,161],"via":[123],"chart":[124,176],"abstraction":[125,165],"efficiency":[126],"comparison":[128],"to":[129,173],"ICD-10":[130],"cohort":[131,222],"generation.":[132],"Results:":[133],"delivers":[136],"sub-second":[137],"query":[138],"latency":[139],"monthly":[141],"operational":[142],"costs":[143],"~USD":[145],"4,000.":[146],"Qwen3":[147],"embeddings":[148],"300-token":[150],"chunk":[151],"size":[152],"achieved":[153],"94.6%":[154],"accuracy":[155],"benchmark.":[158],"In":[159],"evaluation":[162],"three":[164],"tasks,":[166],"reduced":[169],"time-to-completion":[170],"24":[172],"89%":[174],"versus":[175,198],"review":[177],"while":[178],"maintaining":[179],"inter-rater":[180],"agreement":[181],"where":[182],"assessable.":[183],"During":[184],"system-wide":[185],"retrieval,":[186],"recovered":[189],"98%":[190],"patients":[192],"molecularly":[194],"confirmed":[195],"genetic":[196],"diseases,":[197],"most":[200],"75%":[201],"diagnosis":[203],"codes.":[204],"Conclusion:":[205],"Health-system-scale":[206],"is":[209],"technically":[210],"operationally":[212],"feasible.":[213],"provides":[216],"infrastructure":[218],"supporting":[219],"interactive":[220],"generation,":[223],"downstream":[225],"LLM-powered":[226],"applications":[228],"without":[229],"requiring":[230],"specialized":[231],"informatics":[232],"expertise.":[233]},"counts_by_year":[],"updated_date":"2026-07-10T07:45:09.275182","created_date":"2026-04-30T00:00:00"}
