{"id":"https://openalex.org/W7152597729","doi":"https://doi.org/10.48550/arxiv.2604.06212","title":"Code Sharing In Prediction Model Research: A Scoping Review","display_name":"Code Sharing In Prediction Model Research: A Scoping Review","publication_year":2026,"publication_date":"2026-03-16","ids":{"openalex":"https://openalex.org/W7152597729","doi":"https://doi.org/10.48550/arxiv.2604.06212"},"language":"en","primary_location":{"id":"pmh:oai:pure.atira.dk:publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sounack, T, Giancotti, R, Gao, C A, Barre\u00f1ada, L, Lee, H, Lee, H-C, Celi, L A, Moons, K G M, Collins, G S, Lindvall, C & Pollard, T 2026 'Code Sharing In Prediction Model Research : A Scoping Review' arXiv. https://doi.org/10.48550/arXiv.2604.06212","raw_type":"workingPaper"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.birmingham.ac.uk/en/publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133249246","display_name":"Thomas Sounack","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sounack, Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007691618","display_name":"Raffaele Giancotti","orcid":"https://orcid.org/0009-0000-3906-9214"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Giancotti, Raffaele","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133300800","display_name":"Catherine A. Gao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gao, Catherine A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133291899","display_name":"Lasai Barre\u00f1ada","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barre\u00f1ada, Lasai","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026474928","display_name":"Hyeonhoon Lee","orcid":"https://orcid.org/0000-0002-9426-823X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lee, Hyeonhoon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125143913","display_name":"H C Lee","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lee, Hyung-Chul","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133251758","display_name":"Leo Anthony Celi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Celi, Leo Anthony","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133312828","display_name":"Karel G. M. Moons","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Moons, Karel G. M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133269326","display_name":"Gary S. Collins","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Collins, Gary S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028800667","display_name":"Charlotta Lindvall","orcid":"https://orcid.org/0000-0003-2090-2039"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lindvall, Charlotta","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5133307403","display_name":"Tom Pollard","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pollard, Tom","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.33709999918937683,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.33709999918937683,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.20180000364780426,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.13609999418258667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/code-review","display_name":"Code review","score":0.659600019454956},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.5760999917984009},{"id":"https://openalex.org/keywords/codebase","display_name":"Codebase","score":0.5702000260353088},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4894999861717224},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4189999997615814},{"id":"https://openalex.org/keywords/tripod","display_name":"Tripod (photography)","score":0.39169999957084656},{"id":"https://openalex.org/keywords/static-program-analysis","display_name":"Static program analysis","score":0.35670000314712524},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.3540000021457672}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7035999894142151},{"id":"https://openalex.org/C150292731","wikidata":"https://www.wikidata.org/wiki/Q1342704","display_name":"Code review","level":5,"score":0.659600019454956},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.5760999917984009},{"id":"https://openalex.org/C51929080","wikidata":"https://www.wikidata.org/wiki/Q2425187","display_name":"Codebase","level":3,"score":0.5702000260353088},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4894999861717224},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4189999997615814},{"id":"https://openalex.org/C130614165","wikidata":"https://www.wikidata.org/wiki/Q683906","display_name":"Tripod (photography)","level":2,"score":0.39169999957084656},{"id":"https://openalex.org/C137287247","wikidata":"https://www.wikidata.org/wiki/Q1329550","display_name":"Static program analysis","level":4,"score":0.35670000314712524},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.3540000021457672},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33559998869895935},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.31470000743865967},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.3077000081539154},{"id":"https://openalex.org/C2776459999","wikidata":"https://www.wikidata.org/wiki/Q2119376","display_name":"Fidelity","level":2,"score":0.3057999908924103},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.30169999599456787},{"id":"https://openalex.org/C2777561058","wikidata":"https://www.wikidata.org/wiki/Q2652119","display_name":"Program comprehension","level":4,"score":0.2953999936580658},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.28760001063346863},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2867000102996826},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.28380000591278076},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2833999991416931},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.2825999855995178},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.2752000093460083},{"id":"https://openalex.org/C10272871","wikidata":"https://www.wikidata.org/wiki/Q929972","display_name":"Software inspection","level":5,"score":0.2651999890804291},{"id":"https://openalex.org/C120936955","wikidata":"https://www.wikidata.org/wiki/Q2155640","display_name":"Empirical research","level":2,"score":0.26489999890327454},{"id":"https://openalex.org/C117447612","wikidata":"https://www.wikidata.org/wiki/Q1412670","display_name":"Software quality","level":4,"score":0.2619999945163727},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.258899986743927}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:pure.atira.dk:publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sounack, T, Giancotti, R, Gao, C A, Barre\u00f1ada, L, Lee, H, Lee, H-C, Celi, L A, Moons, K G M, Collins, G S, Lindvall, C & Pollard, T 2026 'Code Sharing In Prediction Model Research : A Scoping Review' arXiv. https://doi.org/10.48550/arXiv.2604.06212","raw_type":"workingPaper"},{"id":"doi:10.48550/arxiv.2604.06212","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2604.06212","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/1ea0f420-70e7-47da-a32e-b41899d2c9af","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sounack, T, Giancotti, R, Gao, C A, Barre\u00f1ada, L, Lee, H, Lee, H-C, Celi, L A, Moons, K G M, Collins, G S, Lindvall, C & Pollard, T 2026 'Code Sharing In Prediction Model Research : A Scoping Review' arXiv. https://doi.org/10.48550/arXiv.2604.06212","raw_type":"workingPaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Analytical":[0],"code":[1,13,62,113,132,143,202,234],"is":[2,133],"essential":[3],"for":[4,27,38,222,230],"reproducing":[5],"diagnostic":[6],"and":[7,41,111,116,155,170,207,226,241],"prognostic":[8],"prediction":[9,29,99,199],"model":[10,30,200],"research,":[11,201],"yet":[12],"availability":[14,114],"in":[15,153,177],"the":[16,22,51,86,123,223,228],"published":[17],"literature":[18],"remains":[19,204],"limited.":[20],"While":[21],"TRIPOD":[23,56,73],"statements":[24,115],"set":[25],"standards":[26,37],"reporting":[28,58],"methods,":[31],"they":[32],"do":[33],"not":[34],"define":[35],"explicit":[36],"repository":[39,117],"structure":[40],"documentation.":[42],"This":[43],"review":[44,68],"quantifies":[45],"current":[46],"code-sharing":[47],"practices":[48],"to":[49,82,108],"inform":[50],"development":[52],"of":[53,69,77,213],"TRIPOD-Code,":[54],"a":[55,66,183],"extension":[57,225],"guideline":[59],"focused":[60],"on":[61],"sharing.":[63],"We":[64],"conducted":[65],"scoping":[67],"PubMed-indexed":[70],"articles":[71,110],"citing":[72],"or":[74,96,194],"TRIPOD+AI":[75],"as":[76],"Aug":[78],"11,":[79],"2025,":[80,154],"restricted":[81],"studies":[83,93,160],"retrievable":[84],"via":[85],"PubMed":[87],"Central":[88],"Open":[89],"Access":[90],"API.":[91],"Eligible":[92],"developed,":[94],"updated,":[95],"validated":[97],"multivariable":[98],"models.":[100],"A":[101],"large":[102],"language":[103],"model-assisted":[104],"pipeline":[105],"was":[106,156],"developed":[107],"screen":[109],"extract":[112],"links.":[118],"Repositories":[119],"were":[120,195],"assessed":[121],"with":[122],"same":[124],"LLM":[125],"against":[126],"14":[127],"predefined":[128],"reproducibility-related":[129],"features.":[130],"Our":[131],"made":[134],"publicly":[135],"available.":[136],"Among":[137],"3,967":[138],"eligible":[139],"articles,":[140],"12.2%":[141],"included":[142],"sharing":[144,147,203],"statements.":[145],"Code":[146],"increased":[148],"over":[149],"time,":[150],"reaching":[151],"15.8%":[152],"higher":[157],"among":[158],"TRIPOD+AI-citing":[159],"than":[161],"TRIPOD-citing":[162],"studies.":[163],"Sharing":[164],"prevalence":[165],"varied":[166],"widely":[167],"by":[168],"journal":[169],"country.":[171],"Repository":[172],"assessment":[173],"showed":[174],"substantial":[175],"heterogeneity":[176],"reproducibility":[178],"features:":[179],"most":[180],"repositories":[181],"contained":[182],"README":[184],"file":[185],"(80.5%),":[186],"but":[187],"fewer":[188],"specified":[189],"dependencies":[190],"(37.6%;":[191],"version-constrained":[192],"21.6%)":[193],"modular":[196],"(42.4%).":[197],"In":[198],"relatively":[205],"uncommon,":[206],"when":[208],"shared,":[209],"often":[210],"falls":[211],"short":[212],"being":[214],"reusable.":[215],"These":[216],"findings":[217],"provide":[218],"an":[219],"empirical":[220],"baseline":[221],"TRIPOD-Code":[224],"underscore":[227],"need":[229],"clearer":[231],"expectations":[232],"beyond":[233],"availability,":[235],"including":[236],"documentation,":[237],"dependency":[238],"specification,":[239],"licensing,":[240],"executable":[242],"structure.":[243]},"counts_by_year":[],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2026-04-10T00:00:00"}
