{"id":"https://openalex.org/W7140521884","doi":"https://doi.org/10.48550/arxiv.2603.23849","title":"VILLA: Versatile Information Retrieval From Scientific Literature Using Large LAnguage Models","display_name":"VILLA: Versatile Information Retrieval From Scientific Literature Using Large LAnguage Models","publication_year":2026,"publication_date":"2026-03-25","ids":{"openalex":"https://openalex.org/W7140521884","doi":"https://doi.org/10.48550/arxiv.2603.23849"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2603.23849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.23849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2603.23849","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123029064","display_name":"Blessy Antony","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antony, Blessy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053933293","display_name":"Amartya Dutta","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dutta, Amartya","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130686524","display_name":"Sneha Aggarwal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aggarwal, Sneha","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130678938","display_name":"Vasu Gatne","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gatne, Vasu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015717928","display_name":"Ozan G\u00f6kdemir","orcid":"https://orcid.org/0000-0001-5299-1983"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G\u00f6kdemir, Ozan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130710803","display_name":"Samantha Grimes","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grimes, Samantha","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130632836","display_name":"Adam Lauring","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lauring, Adam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130718717","display_name":"Brian R. Wasik","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wasik, Brian R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081622450","display_name":"Anuj Karpatne","orcid":"https://orcid.org/0000-0003-1647-3534"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karpatne, Anuj","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5130674185","display_name":"T. M. Murali","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Murali, T. M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5694000124931335,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5694000124931335,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.06849999725818634,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.06509999930858612,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6492999792098999},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5932000279426575},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.570900022983551},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49059998989105225},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4871000051498413},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.4205999970436096},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4025999903678894}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7461000084877014},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6492999792098999},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5932000279426575},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.570900022983551},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5515000224113464},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49059998989105225},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4871000051498413},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4799000024795532},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4706999957561493},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.4205999970436096},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4025999903678894},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.3928000032901764},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.3882000148296356},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3628000020980835},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.2800999879837036},{"id":"https://openalex.org/C2777877512","wikidata":"https://www.wikidata.org/wiki/Q1116097","display_name":"Common ground","level":2,"score":0.2800000011920929},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.259799987077713},{"id":"https://openalex.org/C155092808","wikidata":"https://www.wikidata.org/wiki/Q182557","display_name":"Computational linguistics","level":2,"score":0.2596000134944916},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.25529998540878296},{"id":"https://openalex.org/C89686163","wikidata":"https://www.wikidata.org/wiki/Q1187982","display_name":"Vector space model","level":2,"score":0.25360000133514404}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2603.23849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.23849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2603.23849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.23849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8553414940834045,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"The":[0,78],"lack":[1],"of":[2,16,42,80,118,153],"high-quality":[3],"ground":[4,170],"truth":[5,171],"datasets":[6],"to":[7,38,65,106,167],"train":[8],"machine":[9],"learning":[10],"(ML)":[11],"models":[12],"impedes":[13],"the":[14,28,40,130,173],"potential":[15,79],"artificial":[17],"intelligence":[18],"(AI)":[19],"for":[20,52,144,172,202],"science":[21],"research.":[22],"Scientific":[23],"information":[24,72],"extraction":[25,175],"(SIE)":[26],"from":[27,73,163],"literature":[29],"using":[30,183],"LLMs":[31],"is":[32,87],"emerging":[33],"as":[34,59,169],"a":[35,95,113,122,134,150,184],"powerful":[36],"approach":[37],"automate":[39],"creation":[41],"these":[43,108],"datasets.":[44],"However,":[45],"existing":[46],"LLM-based":[47],"approaches":[48],"and":[49,61,68,75,186,189,194,199],"benchmarking":[50],"studies":[51],"SIE":[53,81,116],"focus":[54,69],"on":[55,70],"broad":[56],"topics":[57],"such":[58],"biomedicine":[60],"chemistry,":[62],"are":[63],"limited":[64],"choice-based":[66],"tasks,":[67],"extracting":[71,119],"short":[74],"well-formatted":[76],"text.":[77],"methods":[82],"in":[83,102,121,156],"complex,":[84],"open-ended":[85,115],"tasks":[86],"considerably":[88],"under-explored.":[89],"In":[90,146],"this":[91],"study,":[92],"we":[93,148,178],"used":[94],"domain":[96],"that":[97,125],"has":[98],"been":[99],"virtually":[100],"ignored":[101],"SIE,":[103],"namely":[104],"virology,":[105],"address":[107],"research":[109],"gaps.":[110],"We":[111,132],"design":[112],"unique,":[114],"task":[117],"mutations":[120,155],"given":[123],"virus":[124,160],"modify":[126],"its":[127],"interaction":[128],"with":[129,191],"host.":[131],"develop":[133],"new,":[135],"multi-step":[136],"retrieval":[137],"augmented":[138],"generation":[139],"(RAG)":[140],"framework":[141],"called":[142],"VILLA":[143],"SIE.":[145,203],"parallel,":[147],"curate":[149],"novel":[151,185],"dataset":[152],"629":[154],"ten":[157],"influenza":[158],"A":[159],"proteins":[161],"obtained":[162],"239":[164],"scientific":[165],"publications":[166],"serve":[168],"mutation":[174],"task.":[176],"Finally,":[177],"demonstrate":[179],"VILLA's":[180],"superior":[181],"performance":[182],"comprehensive":[187],"evaluation":[188],"comparison":[190],"vanilla":[192],"RAG":[193],"other":[195],"state-of-the":[196],"art":[197],"RAG-":[198],"agent-based":[200],"tools":[201]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-03-27T00:00:00"}
