{"id":"https://openalex.org/W7140072540","doi":"https://doi.org/10.48550/arxiv.2603.20132","title":"Revisiting Gene Ontology Knowledge Discovery with Hierarchical Feature Selection and Virtual Study Group of AI Agents","display_name":"Revisiting Gene Ontology Knowledge Discovery with Hierarchical Feature Selection and Virtual Study Group of AI Agents","publication_year":2026,"publication_date":"2026-03-20","ids":{"openalex":"https://openalex.org/W7140072540","doi":"https://doi.org/10.48550/arxiv.2603.20132"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2603.20132","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.20132","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2603.20132","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5130348978","display_name":"Cen Wan","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wan, Cen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5130393533","display_name":"Alex Rodrigues de Freitas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Freitas, Alex A.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5130348978"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1808999925851822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1808999925851822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.15049999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.061799999326467514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7462999820709229},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5722000002861023},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5511999726295471},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5067999958992004},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.44859999418258667},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.37299999594688416},{"id":"https://openalex.org/keywords/knowledge-acquisition","display_name":"Knowledge acquisition","score":0.3012999892234802}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7462999820709229},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6883999705314636},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5722000002861023},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5511999726295471},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5067999958992004},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.44859999418258667},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43869999051094055},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43389999866485596},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.37299999594688416},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3702999949455261},{"id":"https://openalex.org/C2777220311","wikidata":"https://www.wikidata.org/wiki/Q6423340","display_name":"Knowledge acquisition","level":2,"score":0.3012999892234802},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.2989000082015991},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2745000123977661},{"id":"https://openalex.org/C2776604539","wikidata":"https://www.wikidata.org/wiki/Q6423395","display_name":"Knowledge sharing","level":2,"score":0.2743000090122223},{"id":"https://openalex.org/C115925183","wikidata":"https://www.wikidata.org/wiki/Q1412694","display_name":"Knowledge-based systems","level":2,"score":0.2705000042915344},{"id":"https://openalex.org/C195732255","wikidata":"https://www.wikidata.org/wiki/Q981008","display_name":"Sociology of scientific knowledge","level":2,"score":0.2644999921321869},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26170000433921814},{"id":"https://openalex.org/C84685590","wikidata":"https://www.wikidata.org/wiki/Q1540472","display_name":"Knowledge engineering","level":2,"score":0.2596000134944916},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.25940001010894775},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.2574999928474426},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.25049999356269836}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2603.20132","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.20132","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2603.20132","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.20132","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"score":0.4604869484901428,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Large":[0],"language":[1],"models":[2],"have":[3],"achieved":[4],"great":[5],"success":[6],"in":[7,136],"multiple":[8],"challenging":[9],"tasks,":[10],"and":[11,93,121],"their":[12],"capacity":[13],"can":[14,115],"be":[15,116],"further":[16],"boosted":[17],"by":[18,68,83,98,118],"the":[19,32,75,78,95,107,110,122,127,137],"emerging":[20],"agentic":[21,44,80,139],"AI":[22,81,111],"techniques.":[23],"This":[24],"new":[25],"computing":[26],"paradigm":[27],"has":[28],"already":[29],"started":[30],"revolutionising":[31],"traditional":[33],"scientific":[34,113],"discovery":[35,142],"pipelines.":[36],"In":[37],"this":[38],"work,":[39],"we":[40],"propose":[41],"a":[42],"novel":[43],"AI-based":[45,140],"knowledge":[46,58,141],"discovery-oriented":[47],"virtual":[48,128],"study":[49,129],"group":[50,130],"that":[51,65,106],"aims":[52],"to":[53],"extract":[54],"meaningful":[55],"ageing-related":[56,61,89],"biological":[57,96],"considering":[59,84],"highly":[60],"Gene":[62,90],"Ontology":[63,91],"terms":[64,92],"are":[66],"selected":[67],"hierarchical":[69],"feature":[70],"selection":[71],"methods.":[72],"We":[73],"investigate":[74],"performance":[76],"of":[77,109,126],"proposed":[79,123],"framework":[82],"four":[85],"different":[86],"model":[87],"organisms'":[88],"validate":[94],"findings":[97],"reviewing":[99],"existing":[100,119],"research":[101],"articles.":[102],"It":[103],"is":[104],"found":[105],"majority":[108],"agent-generated":[112],"claims":[114],"supported":[117],"literatures":[120],"internal":[124],"mechanisms":[125],"also":[131],"play":[132],"an":[133],"important":[134],"role":[135],"designed":[138],"framework.":[143]},"counts_by_year":[],"updated_date":"2026-03-24T06:04:31.470712","created_date":"2026-03-24T00:00:00"}
