{"id":"https://openalex.org/W7133354086","doi":"https://doi.org/10.48550/arxiv.2603.00876","title":"BioProAgent: Neuro-Symbolic Grounding for Constrained Scientific Planning","display_name":"BioProAgent: Neuro-Symbolic Grounding for Constrained Scientific Planning","publication_year":2026,"publication_date":"2026-03-01","ids":{"openalex":"https://openalex.org/W7133354086","doi":"https://doi.org/10.48550/arxiv.2603.00876"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2603.00876","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.00876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2603.00876","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5128006739","display_name":"Yuyang Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Yuyang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127988463","display_name":"Jingya Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Jingya","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005977834","display_name":"Liuzhenghao Lv","orcid":"https://orcid.org/0000-0001-5604-1678"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lv, Liuzhenghao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5127879570","display_name":"Yonghong Tian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tian, Yonghong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.3781999945640564,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.3781999945640564,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":0.07699999958276749,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11689","display_name":"Adversarial Robustness in Machine Learning","score":0.05380000174045563,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6924999952316284},{"id":"https://openalex.org/keywords/bridge","display_name":"Bridge (graph theory)","score":0.669700026512146},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5759000182151794},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5587999820709229},{"id":"https://openalex.org/keywords/ground","display_name":"Ground","score":0.5134000182151794},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.4560000002384186},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4034000039100647},{"id":"https://openalex.org/keywords/symbol","display_name":"Symbol (formal)","score":0.38920000195503235}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6924999952316284},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.669700026512146},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6337000131607056},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5759000182151794},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5587999820709229},{"id":"https://openalex.org/C168993435","wikidata":"https://www.wikidata.org/wiki/Q6501125","display_name":"Ground","level":2,"score":0.5134000182151794},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.4560000002384186},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4034000039100647},{"id":"https://openalex.org/C134400042","wikidata":"https://www.wikidata.org/wiki/Q2372244","display_name":"Symbol (formal)","level":2,"score":0.38920000195503235},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3434999883174896},{"id":"https://openalex.org/C116672817","wikidata":"https://www.wikidata.org/wiki/Q1454986","display_name":"Physical system","level":2,"score":0.3370000123977661},{"id":"https://openalex.org/C167822520","wikidata":"https://www.wikidata.org/wiki/Q176452","display_name":"Finite-state machine","level":2,"score":0.32910001277923584},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.3246000111103058},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.3197000026702881},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.3102000057697296},{"id":"https://openalex.org/C2984019128","wikidata":"https://www.wikidata.org/wiki/Q1637433","display_name":"Physical modelling","level":2,"score":0.3095000088214874},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.30880001187324524},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.2858000099658966},{"id":"https://openalex.org/C2781460075","wikidata":"https://www.wikidata.org/wiki/Q1399332","display_name":"Compliance (psychology)","level":2,"score":0.274399995803833},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.26440000534057617},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.26339998841285706},{"id":"https://openalex.org/C65414064","wikidata":"https://www.wikidata.org/wiki/Q484105","display_name":"Autonomy","level":2,"score":0.25099998712539673}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2603.00876","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.00876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2603.00876","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2603.00876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Large":[0],"language":[1],"models":[2],"(LLMs)":[3],"have":[4],"demonstrated":[5],"significant":[6],"reasoning":[7],"capabilities":[8],"in":[9,21,51,82,122],"scientific":[10],"discovery":[11],"but":[12],"struggle":[13],"to":[14,18,109],"bridge":[15],"the":[16,78,99],"gap":[17],"physical":[19,106,124],"execution":[20],"wet-labs.":[22],"In":[23,98],"these":[24],"irreversible":[25,123],"environments,":[26],"probabilistic":[27,49],"hallucinations":[28],"are":[29,117],"not":[30],"merely":[31],"incorrect;":[32],"they":[33],"can":[34],"cause":[35],"equipment":[36],"damage":[37],"or":[38],"experimental":[39],"failure.":[40],"We":[41,58],"propose":[42],"BioProAgent,":[43],"a":[44,52,60,66],"neuro-symbolic":[45,115],"framework":[46],"that":[47,64,114],"anchors":[48],"planning":[50],"deterministic":[53],"Finite":[54],"State":[55],"Machine":[56],"(FSM).":[57],"introduce":[59],"State-Augmented":[61],"Planning":[62],"mechanism":[63],"enforces":[65],"rigorous":[67],"Design-Verify-Rectify":[68],"workflow,":[69],"ensuring":[70],"hardware":[71],"compliance":[72,107],"before":[73],"execution.":[74],"Furthermore,":[75],"we":[76],"address":[77],"context":[79],"bottleneck":[80],"inherent":[81],"complex":[83],"device":[84],"schemas":[85],"by":[86,93],"Semantic":[87],"Symbol":[88],"Grounding,":[89],"reducing":[90],"token":[91],"consumption":[92],"~6*":[94],"through":[95],"symbolic":[96],"abstraction.":[97],"extended":[100],"BioProBench":[101],"benchmark,":[102],"BioProAgent":[103],"achieves":[104],"95.6%":[105],"(compared":[108],"21.0%":[110],"for":[111,119],"ReAct),":[112],"demonstrating":[113],"constraints":[116],"essential":[118],"reliable":[120],"autonomy":[121],"environments.":[125],"Code:":[126],"https://github.com/YuyangSunshine/bioproagent":[127],"|":[128],"Website:":[129],"https://yuyangsunshine.github.io/BioPro-Project.":[130]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-03-04T00:00:00"}
