{"id":"https://openalex.org/W7131407482","doi":"https://doi.org/10.48550/arxiv.2602.19158","title":"DoAtlas-1: A Causal Compilation Paradigm for Clinical AI","display_name":"DoAtlas-1: A Causal Compilation Paradigm for Clinical AI","publication_year":2026,"publication_date":"2026-02-22","ids":{"openalex":"https://openalex.org/W7131407482","doi":"https://doi.org/10.48550/arxiv.2602.19158"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2602.19158","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.19158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2602.19158","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5126744205","display_name":"Yulong Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Li, Yulong","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123059531","display_name":"Jianxu Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Jianxu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126686845","display_name":"Xiwei Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Xiwei","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126670616","display_name":"Chuanyue Suo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Suo, Chuanyue","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126694217","display_name":"Rong Xia","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xia, Rong","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126671363","display_name":"Zhixiang Lu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lu, Zhixiang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124101603","display_name":"Yichen Li","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Li, Yichen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126714513","display_name":"Xinlin Zhuang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhuang, Xinlin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Menon, Niranjana Arun","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Menon, Niranjana Arun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011835422","display_name":"Yutong Xie","orcid":"https://orcid.org/0000-0002-6644-1250"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xie, Yutong","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125387551","display_name":"Eran Segal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Segal, Eran","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5121288446","display_name":"Imran Razzak","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Razzak, Imran","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5126744205"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.4099999964237213,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.4099999964237213,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.2353000044822693,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.09910000115633011,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/counterfactual-thinking","display_name":"Counterfactual thinking","score":0.6772000193595886},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.6658999919891357},{"id":"https://openalex.org/keywords/causal-model","display_name":"Causal model","score":0.46560001373291016},{"id":"https://openalex.org/keywords/causal-inference","display_name":"Causal inference","score":0.459199994802475},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.4334000051021576},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.4059999883174896},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4000999927520752}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6912999749183655},{"id":"https://openalex.org/C108650721","wikidata":"https://www.wikidata.org/wiki/Q1783253","display_name":"Counterfactual thinking","level":2,"score":0.6772000193595886},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.6658999919891357},{"id":"https://openalex.org/C11671645","wikidata":"https://www.wikidata.org/wiki/Q5054567","display_name":"Causal model","level":2,"score":0.46560001373291016},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.459199994802475},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.4334000051021576},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4291999936103821},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.4059999883174896},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4000999927520752},{"id":"https://openalex.org/C115086926","wikidata":"https://www.wikidata.org/wiki/Q17004651","display_name":"Causal reasoning","level":3,"score":0.3986999988555908},{"id":"https://openalex.org/C2780665704","wikidata":"https://www.wikidata.org/wiki/Q959298","display_name":"Intervention (counseling)","level":2,"score":0.33739998936653137},{"id":"https://openalex.org/C85847156","wikidata":"https://www.wikidata.org/wiki/Q59015987","display_name":"Verifiable secret sharing","level":3,"score":0.3100000023841858},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.30889999866485596},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.30820000171661377},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.3018999993801117},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.29319998621940613},{"id":"https://openalex.org/C98184364","wikidata":"https://www.wikidata.org/wiki/Q1780131","display_name":"Argument (complex analysis)","level":2,"score":0.2784999907016754},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2766000032424927},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.26460000872612},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.25769999623298645},{"id":"https://openalex.org/C43540301","wikidata":"https://www.wikidata.org/wiki/Q689971","display_name":"Paradigm shift","level":2,"score":0.25529998540878296},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.25220000743865967}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2602.19158","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.19158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2602.19158","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.19158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Medical":[0],"foundation":[1],"models":[2],"generate":[3],"narrative":[4,32],"explanations":[5],"but":[6],"cannot":[7],"quantify":[8],"intervention":[9,50],"effects,":[10,70],"detect":[11],"evidence":[12,30,42],"conflicts,":[13],"or":[14],"validate":[15],"literature":[16],"claims,":[17],"limiting":[18],"clinical":[19],"auditability.":[20],"We":[21,76],"propose":[22],"causal":[23,62,126],"compilation,":[24],"a":[25],"paradigm":[26,38,79,114],"that":[27],"transforms":[28],"medical":[29,116],"from":[31,86,118],"text":[33,119],"into":[34,43],"executable":[35,61],"code.":[36],"The":[37,103],"standardizes":[39],"heterogeneous":[40,69],"research":[41],"structured":[44],"estimand":[45],"objects,":[46],"each":[47],"explicitly":[48],"specifying":[49],"contrast,":[51],"effect":[52,84,90],"scale,":[53],"time":[54],"horizon,":[55],"and":[56,73,95,109,124],"target":[57],"population,":[58],"supporting":[59],"six":[60],"queries:":[63],"do-calculus,":[64],"counterfactual":[65],"reasoning,":[66],"temporal":[67],"trajectories,":[68],"mechanistic":[71],"decomposition,":[72],"joint":[74],"interventions.":[75],"instantiate":[77],"this":[78],"in":[80],"DoAtlas-1,":[81],"compiling":[82],"1,445":[83],"kernels":[85],"754":[87],"studies":[88],"through":[89],"standardization,":[91],"conflict-aware":[92],"graph":[93],"construction,":[94],"real-world":[96],"validation":[97],"(Human":[98],"Phenotype":[99],"Project,":[100],"10,000":[101],"participants).":[102],"system":[104],"achieves":[105],"98.5%":[106],"canonicalization":[107],"accuracy":[108],"80.5%":[110],"query":[111],"executability.":[112],"This":[113],"shifts":[115],"AI":[117],"generation":[120],"to":[121],"executable,":[122],"auditable,":[123],"verifiable":[125],"reasoning.":[127]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2026-02-26T00:00:00"}
