{"id":"https://openalex.org/W7130605282","doi":"https://doi.org/10.48550/arxiv.2602.16047","title":"A Unified, Cross-Platform Framework for Automatic GUI and Plugin Generation in Structural Bioinformatics and Beyond","display_name":"A Unified, Cross-Platform Framework for Automatic GUI and Plugin Generation in Structural Bioinformatics and Beyond","publication_year":2026,"publication_date":"2026-02-17","ids":{"openalex":"https://openalex.org/W7130605282","doi":"https://doi.org/10.48550/arxiv.2602.16047"},"language":null,"primary_location":{"id":"pmh:doi:10.48550/arxiv.2602.16047","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059161283","display_name":"Sikao Guo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guo, Sikao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040250330","display_name":"Edoardo Sarti","orcid":"https://orcid.org/0000-0003-2417-1448"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sarti, Edoardo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5029454516","display_name":"Fr\u00e9d\u00e9ric Cazals","orcid":"https://orcid.org/0000-0003-2735-6755"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cazals, Fr\u00e9d\u00e9ric","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38670000433921814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.38670000433921814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.19539999961853027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.08760000020265579,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8341000080108643},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7843000292778015},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7797999978065491},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.728600025177002},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5239999890327454},{"id":"https://openalex.org/keywords/code-generation","display_name":"Code generation","score":0.4104999899864197},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.3840000033378601},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.3456999957561493}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8341000080108643},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7882000207901001},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7843000292778015},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7797999978065491},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.728600025177002},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5688999891281128},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5288000106811523},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5239999890327454},{"id":"https://openalex.org/C133162039","wikidata":"https://www.wikidata.org/wiki/Q1061077","display_name":"Code generation","level":3,"score":0.4104999899864197},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3885999917984009},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.3840000033378601},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3456999957561493},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.3425000011920929},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.3328000009059906},{"id":"https://openalex.org/C2780070844","wikidata":"https://www.wikidata.org/wiki/Q857815","display_name":"Plug and play","level":2,"score":0.3314000070095062},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.32249999046325684},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3192000091075897},{"id":"https://openalex.org/C163888707","wikidata":"https://www.wikidata.org/wiki/Q1154450","display_name":"Windows Workflow Foundation","level":4,"score":0.3091000020503998},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.30630001425743103},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.2921999990940094},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.28290000557899475},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.2777999937534332},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.26499998569488525}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:doi:10.48550/arxiv.2602.16047","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.48550/arxiv.2602.16047","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.16047","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:doi:10.48550/arxiv.2602.16047","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"sustainable_development_goals":[{"score":0.40869855880737305,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0,131],"present":[1],"a":[2,166],"workflow":[3,25,135,161],"and":[4,46,68,73,89,101,110,121,157],"associated":[5],"toolkit":[6],"to":[7,136],"automate":[8],"the":[9,33,38,44,49,54,62,71,80,87,146,173,177],"creation":[10],"of":[11,27,43,116],"graphical":[12],"user":[13],"interfaces":[14,22],"(GUI)":[15],"for":[16,53,127,142],"executables":[17,144],"run":[18],"from":[19,145,176],"command":[20],"line":[21],"(CLI).":[23],"The":[24,106,160],"consists":[26],"three":[28,78,102,152],"phases,":[29],"namely":[30,154],"(Step":[31,36,47],"1)":[32],"plugin":[34,50],"design,":[35],"2)":[37],"formal":[39],"(platform":[40],"independent)":[41],"specification":[42],"GUI,":[45],"3)":[48],"code":[51],"generation":[52],"targeted":[55],"platforms.":[56],"Our":[57],"architecture":[58],"is":[59],"aligned":[60],"with":[61],"Model--View--Presenter":[63],"(MVP)":[64],"pattern:":[65],"steps":[66,99],"one":[67,94],"two":[69,100],"build":[70],"Model":[72],"View":[74],"descriptions,":[75],"while":[76,168],"step":[77],"implements":[79],"Presenter":[81],"layer":[82],"that":[83],"binds":[84],"inputs,":[85],"invokes":[86],"CLI,":[88],"updates":[90],"outputs.":[91],"Once":[92],"Step":[93],"has":[95],"been":[96],"(manually)":[97],"completed,":[98],"are":[103],"fully":[104],"automated.":[105],"decoupled":[107],"MVP":[108],"design":[109],"platform-specific":[111],"generator":[112],"modules":[113],"enable":[114],"reuse":[115],"logic,":[117],"portability":[118],"across":[119],"ecosystems,":[120],"significant":[122],"reductions":[123],"in":[124,139,172],"engineering":[125],"effort":[126],"complex":[128],"interactive":[129],"applications.":[130],"primarily":[132],"use":[133],"our":[134],"generate":[137],"GUI":[138],"structural":[140],"bioinformatics":[141],"CLI":[143],"Structural":[147],"Bioinformatics":[148],"Library":[149],"(SBL),":[150],"targeting":[151],"platforms,":[153],"VMD,":[155],"Pymol":[156],"Web":[158],"servers.":[159],"can":[162],"be":[163],"used":[164],"as":[165],"guideline,":[167],"its":[169],"implementation":[170],"available":[171],"package":[174],"Plugin_manager":[175],"SBL,":[178],"see":[179],"https://sbl.inria.fr/doc/Plugin_manager-user-manual.html.":[180]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2026-02-20T00:00:00"}
