{"id":"https://openalex.org/W7127916439","doi":"https://doi.org/10.48550/arxiv.2602.04849","title":"El Agente Estructural: An Artificially Intelligent Molecular Editor","display_name":"El Agente Estructural: An Artificially Intelligent Molecular Editor","publication_year":2026,"publication_date":"2026-02-04","ids":{"openalex":"https://openalex.org/W7127916439","doi":"https://doi.org/10.48550/arxiv.2602.04849"},"language":null,"primary_location":{"id":"pmh:doi:10.48550/arxiv.2602.04849","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083893312","display_name":"Changhyeok Choi","orcid":"https://orcid.org/0000-0002-7181-3100"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Choi, Changhyeok","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121147630","display_name":"Yunheng Zou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zou, Yunheng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101667186","display_name":"M. M\u00fcller","orcid":"https://orcid.org/0009-0006-1182-3784"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M\u00fcller, Marcel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125254009","display_name":"Han Hao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hao, Han","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090245061","display_name":"Yeonghun Kang","orcid":"https://orcid.org/0000-0001-5191-5735"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kang, Yeonghun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101730275","display_name":"Juan B. P\u00e9rez-S\u00e1nchez","orcid":"https://orcid.org/0000-0003-1267-3627"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P\u00e9rez-S\u00e1nchez, Juan B.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089709980","display_name":"Ignacio Gust\u00edn","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gustin, Ignacio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125182699","display_name":"Hanyong Xu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu, Hanyong","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Vakili, Mohammad Ghazi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vakili, Mohammad Ghazi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117487116","display_name":"Chris Crebolder","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Crebolder, Chris","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125168871","display_name":"Al\u00e1n Aspuru-Guzik","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aspuru-Guzik, Al\u00e1n","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5125182013","display_name":"Varinia Bernales","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bernales, Varinia","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5083893312"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9380000233650208,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9380000233650208,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.009600000455975533,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4580000042915344},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.41659998893737793},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.3944000005722046},{"id":"https://openalex.org/keywords/schematic","display_name":"Schematic","score":0.35670000314712524},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.33390000462532043},{"id":"https://openalex.org/keywords/first-generation","display_name":"First generation","score":0.3206999897956848},{"id":"https://openalex.org/keywords/molecular-model","display_name":"Molecular model","score":0.30149999260902405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5008000135421753},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4580000042915344},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.41659998893737793},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.3944000005722046},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3837999999523163},{"id":"https://openalex.org/C192328126","wikidata":"https://www.wikidata.org/wiki/Q4514647","display_name":"Schematic","level":2,"score":0.35670000314712524},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3540000021457672},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.33390000462532043},{"id":"https://openalex.org/C2992829110","wikidata":"https://www.wikidata.org/wiki/Q3921615","display_name":"First generation","level":3,"score":0.3206999897956848},{"id":"https://openalex.org/C178910836","wikidata":"https://www.wikidata.org/wiki/Q2196961","display_name":"Molecular model","level":2,"score":0.30149999260902405},{"id":"https://openalex.org/C126766683","wikidata":"https://www.wikidata.org/wiki/Q6896006","display_name":"Molecular graphics","level":3,"score":0.2913999855518341},{"id":"https://openalex.org/C179303850","wikidata":"https://www.wikidata.org/wiki/Q4300362","display_name":"Molecular recognition","level":3,"score":0.2870999872684479},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.28349998593330383},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.25519999861717224},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.2522999942302704},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.25220000743865967}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:doi:10.48550/arxiv.2602.04849","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.48550/arxiv.2602.04849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.04849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:doi:10.48550/arxiv.2602.04849","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0],"present":[1],"El":[2,155],"Agente":[3,156],"Estructural,":[4],"a":[5,40,74,90],"multimodal,":[6],"natural-language-driven":[7],"geometry-generation":[8],"and":[9,15,46,62,121,125,141,174],"manipulation":[10,88],"agent":[11],"for":[12,171],"autonomous":[13,159],"chemistry":[14,162],"molecular":[16,19,33,71,143],"modelling.":[17],"Unlike":[18],"generation":[20,114,124,173],"or":[21,56],"editing":[22,175],"via":[23],"generative":[24],"models,":[25],"Estructural":[26,83,153],"mimics":[27],"how":[28,130],"human":[29],"experts":[30],"directly":[31],"manipulate":[32],"systems":[34],"in":[35],"three":[36],"dimensions":[37],"by":[38,167],"integrating":[39],"comprehensive":[41],"set":[42],"of":[43,76,93,115,152,176],"domain-informed":[44],"tools":[45,170],"vision-language":[47],"models.":[48],"This":[49],"design":[50],"enables":[51,84],"precise":[52],"control":[53],"over":[54],"atomic":[55,60],"functional":[57],"group":[58],"replacements,":[59],"connectivity,":[61],"stereochemistry":[63],"without":[64],"the":[65,150,172],"need":[66],"to":[67],"rebuild":[68],"extensive":[69],"core":[70],"frameworks.":[72],"Through":[73],"series":[75],"representative":[77],"case":[78],"studies,":[79],"we":[80],"demonstrate":[81],"that":[82],"chemically":[85],"meaningful":[86],"geometry":[87,123],"across":[89],"wide":[91],"range":[92],"real-world":[94],"scenarios.":[95],"These":[96,127],"include":[97],"site-selective":[98],"functionalization,":[99],"ligand":[100,102],"binding,":[101],"exchange,":[103],"stereochemically":[104],"controlled":[105],"structure":[106,146],"construction,":[107],"isomer":[108],"interconversion,":[109],"fragment-level":[110],"structural":[111],"analysis,":[112],"image-guided":[113],"structures":[116],"from":[117],"schematic":[118],"reaction":[119],"mechanisms,":[120],"mechanism-driven":[122],"modification.":[126],"examples":[128],"illustrate":[129],"multimodal":[131],"reasoning,":[132],"when":[133],"combined":[134],"with":[135],"specialized":[136],"geometry-aware":[137],"tools,":[138],"supports":[139],"interactive":[140],"context-aware":[142],"modelling":[144],"beyond":[145],"generation.":[147],"Looking":[148],"forward,":[149],"integration":[151],"into":[154],"Quntur,":[157],"an":[158],"multi-agent":[160],"quantum":[161],"platform,":[163],"enhances":[164],"its":[165],"capabilities":[166],"adding":[168],"sophisticated":[169],"three-dimensional":[177],"structures.":[178]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2026-02-07T00:00:00"}
