{"id":"https://openalex.org/W6948054392","doi":"https://doi.org/10.48550/arxiv.2508.09849","title":"ARI3D: A Software for Interactive Quantification of Regions in X-Ray CT 3D Images","display_name":"ARI3D: A Software for Interactive Quantification of Regions in X-Ray CT 3D Images","publication_year":2025,"publication_date":"2025-08-13","ids":{"openalex":"https://openalex.org/W6948054392","doi":"https://doi.org/10.48550/arxiv.2508.09849"},"language":"en","primary_location":{"id":"pmh:oai:edoc.mdc-berlin.de:25771","is_oa":false,"landing_page_url":"https://doi.org/10.48550/arXiv.2508.09849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2508.09849","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Albrecht, Jan Phillipp","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Albrecht, Jan Phillipp","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Godinho, Jose R. A.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Godinho, Jose R. A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"H\u00fcbers, Christina","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H\u00fcbers, Christina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Schmidt, Deborah","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schmidt, Deborah","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.14429999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.14429999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.1046999990940094,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.06080000102519989,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6626999974250793},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.5529000163078308},{"id":"https://openalex.org/keywords/partial-volume","display_name":"Partial volume","score":0.48809999227523804},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.4007999897003174},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.36640000343322754},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.36399999260902405},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3634999990463257},{"id":"https://openalex.org/keywords/computed-tomography","display_name":"Computed tomography","score":0.3443000018596649},{"id":"https://openalex.org/keywords/limit","display_name":"Limit (mathematics)","score":0.33230000734329224}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7408999800682068},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6626999974250793},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6521000266075134},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5782999992370605},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.5529000163078308},{"id":"https://openalex.org/C82233179","wikidata":"https://www.wikidata.org/wiki/Q2054500","display_name":"Partial volume","level":2,"score":0.48809999227523804},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.4007999897003174},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.398499995470047},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.36640000343322754},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.36399999260902405},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3634999990463257},{"id":"https://openalex.org/C544519230","wikidata":"https://www.wikidata.org/wiki/Q32566","display_name":"Computed tomography","level":2,"score":0.3443000018596649},{"id":"https://openalex.org/C151201525","wikidata":"https://www.wikidata.org/wiki/Q177239","display_name":"Limit (mathematics)","level":2,"score":0.33230000734329224},{"id":"https://openalex.org/C53533937","wikidata":"https://www.wikidata.org/wiki/Q185020","display_name":"Histogram","level":3,"score":0.3319000005722046},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.32589998841285706},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.30970001220703125},{"id":"https://openalex.org/C95986675","wikidata":"https://www.wikidata.org/wiki/Q185168","display_name":"Quantitative analysis (chemistry)","level":2,"score":0.30720001459121704},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.30709999799728394},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.28999999165534973},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2883000075817108},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.2870999872684479},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.2808000147342682},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.2775999903678894},{"id":"https://openalex.org/C116321358","wikidata":"https://www.wikidata.org/wiki/Q1662063","display_name":"Industrial computed tomography","level":3,"score":0.2770000100135803},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.27090001106262207},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.26820001006126404},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.263700008392334},{"id":"https://openalex.org/C30769735","wikidata":"https://www.wikidata.org/wiki/Q2165951","display_name":"Volume rendering","level":3,"score":0.25619998574256897},{"id":"https://openalex.org/C60478076","wikidata":"https://www.wikidata.org/wiki/Q3036835","display_name":"Reference data","level":2,"score":0.2551000118255615}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:edoc.mdc-berlin.de:25771","is_oa":false,"landing_page_url":"https://doi.org/10.48550/arXiv.2508.09849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"},{"id":"doi:10.48550/arxiv.2508.09849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2508.09849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2508.09849","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2508.09849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"X-ray":[0,94],"computed":[1],"tomography":[2],"(CT)":[3],"is":[4,21,39,86],"the":[5,11,19,34,47,56,70,74,100,133],"main":[6],"3D":[7,36,145],"technique":[8],"for":[9,127],"imaging":[10,43],"internal":[12],"microstructures":[13,20,71],"of":[14,18,28,64,103,114,138,154],"materials.":[15],"Quantitative":[16],"analysis":[17,57,146],"usually":[22],"achieved":[23],"by":[24,41],"applying":[25],"a":[26,62,80,104,115],"sequence":[27],"steps":[29,102],"that":[30,147],"are":[31],"implemented":[32,150],"to":[33,60,66,88,107,120],"entire":[35],"image.":[37,117],"This":[38],"challenged":[40],"various":[42,101],"artifacts":[44],"inherent":[45],"from":[46],"technique,":[48],"e.g.,":[49],"beam":[50],"hardening":[51],"and":[52,68,109,136,141],"partial":[53,128],"volume.":[54],"Consequently,":[55],"requires":[58],"users":[59,98],"make":[61],"number":[63],"decisions":[65],"segment":[67],"classify":[69,108],"based":[72],"on":[73],"voxel":[75],"gray-values.":[76],"In":[77],"this":[78],"context,":[79],"software":[81],"tool,":[82],"here":[83],"called":[84],"ARI3D,":[85],"proposed":[87],"interactively":[89],"analyze":[90],"regions":[91,113],"in":[92,151],"three-dimensional":[93,116],"CT":[95],"images,":[96],"assisting":[97],"through":[99],"protocol":[105],"designed":[106],"quantify":[110],"objects":[111],"within":[112],"ARI3D":[118],"aims":[119],"1)":[121],"Improve":[122],"phase":[123],"identification;":[124],"2)":[125],"Account":[126],"volume":[129],"effect;":[130],"3)":[131],"Increase":[132],"detection":[134],"limit":[135],"accuracy":[137],"object":[139],"quantification;":[140],"4)":[142],"Harmonize":[143],"quantitative":[144],"can":[148],"be":[149],"different":[152],"fields":[153],"science.":[155]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}